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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.2175s0023.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
HD-ZIP |
Protein Properties |
Length: 687aa MW: 76338.8 Da PI: 6.4681 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.2175s0023.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 60.2 | 3.2e-19 | 28 | 79 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++t++q+++Le+ F+++++p++++r +L+++lgL rq+k+WFqNrR+++k
Cagra.2175s0023.1.p 28 HRHTPHQIQRLESTFNECQHPDEKQRNQLSRELGLAPRQIKFWFQNRRTQKK 79
689**********************************************988 PP
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2 | START | 150.2 | 1.8e-47 | 218 | 439 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SE CS
START 2 laeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddke...qWdetlak 78
+a +a++el+++ + +ep+W + + ++ e++ ++ + + ++ea+r sgvv+ ++ +lv l+d+ + + + +a+
Cagra.2175s0023.1.p 218 IAVTAMEELLRLLQTNEPLWITTDgcREVINLESYENLFPRSSsnggkkneLRMEASRSSGVVFTNALTLVDMLMDSVKsadFFPTIVAA 307
6889*******************9997888888888876655568899******************************99988999999* PP
EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS
START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161
+tl+vissg al+lm elq+lsp+v+ R+f ++Ry++q + g+w+i+ vS + +q++++ R+ ++pSg+li+++sng+
Cagra.2175s0023.1.p 308 SKTLAVISSGlrgnhgDALHLMIEELQVLSPMVAtREFCVLRYCQQIEHGTWAIANVSYEFPQFVSQ----SRSYRFPSGCLIQDMSNGY 393
*****************************************************************95....56666************** PP
EEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
START 162 skvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
skvtwvehv+ +++ p h++++ v++gla+ga +w +tlqr ce+
Cagra.2175s0023.1.p 394 SKVTWVEHVEFEEQEPiHEIFKDSVHKGLAFGAERWISTLQRMCER 439
********************************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010091 | Biological Process | trichome branching |
GO:0048497 | Biological Process | maintenance of floral organ identity |
GO:0008289 | Molecular Function | lipid binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 687 aa
Download sequence Send
to blast |
MNMEFFGDSQ IHDGSETDKK NKKKKRFHRH TPHQIQRLES TFNECQHPDE KQRNQLSREL 60 GLAPRQIKFW FQNRRTQKKA QHERADNCAL KEENDKIRCE NIAIREAIKH AICPNCGDSP 120 VNEDSYFDEQ KLRIENAQLR DELERVSSIA AKFIGRPISH LPPLLNPMHI SPLELFHSGP 180 SLDFDLLPGS CSSMALPTLP SQPNLVLSEM DKSLMTNIAV TAMEELLRLL QTNEPLWITT 240 DGCREVINLE SYENLFPRSS SNGGKKNELR MEASRSSGVV FTNALTLVDM LMDSVKSADF 300 FPTIVAASKT LAVISSGLRG NHGDALHLMI EELQVLSPMV ATREFCVLRY CQQIEHGTWA 360 IANVSYEFPQ FVSQSRSYRF PSGCLIQDMS NGYSKVTWVE HVEFEEQEPI HEIFKDSVHK 420 GLAFGAERWI STLQRMCERF TEPATSSLDL GGVIPSPEGK RSIMRLAHRM VSNFCLSVGT 480 SNNTRSTVVS GLDEFAIRVT SHKSLHEPNG MVLCAATSFW LPNSPLNVFN FLKDERTRPQ 540 WDVLSNGNPV QEVANIANGS NPGNCISVLR GFNVSSSQNN MLILQESCID SSSAALVIYT 600 PVDLPALNIA MSGQDTSCIP ILPSGFAISP DGSSKGGGSL ITVGFQIMVS GLQPAKLNME 660 SMETVNNLIN TTVHHIKTTL NCPSTA*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that acts as negative regulator of trichome branching in association with HDG11 (PubMed:16778018). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). Acts as positive regulator of SCL18/LAS expression (PubMed:25358340). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:25358340, ECO:0000269|PubMed:25564655}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB493465 | 0.0 | AB493465.1 Arabidopsis thaliana At1g17920 mRNA for hypothetical protein, partial cds, clone: RAAt1g17920. |