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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cagra.2104s0007.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
bHLH |
| Protein Properties |
Length: 606aa MW: 67585 Da PI: 4.7183 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.2104s0007.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 44.9 | 2.1e-14 | 413 | 459 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
+h E++RR+++N++f +Lr+++P+ + K +K++iL ++eY+++Lq
Cagra.2104s0007.1.p 413 NHALCEKKRREKLNERFMTLRSIIPSiS------KIDKVSILDDTIEYLQELQ 459
79999*********************66......******************9 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 606 aa
Download sequence Send
to blast |
MLHGDEETMT TEENRTVPEN LKKQLAVSVR NIQWSYGIFW SVSPSQPGVL EWGDGYYNGD 60
IKTRKTIQAA EVKVDQLGLE RSEQLRELYE SLSLAESSAS GGSQVTRRAS AAALSPEDLT 120
DTEWYYLVCM SFVFNIGEGI PGGALTNGEP IWLCNAETAD SKVFTRSLLA KSASLQTVVC 180
FPFLGGVLEI GTTEHITEDL NVIQCVKTLF LEAPPYPTIS TRSDYQEVFD PLSDDKYIPV 240
FGTEAFPTPS TSGFEQEPED HDSFINDGGA SQVQSWQFVG EELSNCVHQS LNSSDCVSQT 300
FVGPSGRVAC DPRKSRVQRL GQIQEQGNHV NMDDDVHYQG VISTIFKTTH QLILGPQFQN 360
FDKRSSFTRW KRSSSVKTLG ETSQKMIKKI LFEVPLMNKK EELLTDTPEE TGNHALCEKK 420
RREKLNERFM TLRSIIPSIS KIDKVSILDD TIEYLQELQK RVQELESCRE SADTETRMTM 480
MKRKKPEDED ERASANCMNS KRKGSDVNVV GEDEPVSTGY AGLTDNLRIS SVGNEVVIEL 540
RCAWREGILL EIMDVISDLN LDSHSVQSST GDGLLCLTVN CKHKGTKIAT RGMIQEALQK 600
VAWIC*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4rqw_A | 2e-16 | 34 | 210 | 24 | 192 | Transcription factor MYC3 |
| 4rqw_B | 2e-16 | 34 | 210 | 24 | 192 | Transcription factor MYC3 |
| 4rs9_A | 2e-16 | 34 | 210 | 24 | 192 | Transcription factor MYC3 |
| 4yz6_A | 2e-16 | 34 | 210 | 24 | 192 | Transcription factor MYC3 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator, when associated with MYB75/PAP1, MYB90/PAP2 or TT2. Involved in epidermal cell fate specification. Regulates negatively stomata formation but promotes trichome formation. Together with MYB66/WER, promotes the formation of non-hair cells in root epidermis cells in the N position. Whereas together with CPC, promotes the formation of hair cells in root epidermis cells in the H position by inhibiting non-hair cell formation. Seems also to play a role in the activation of anthocyanin biosynthesis, probably together with MYB75/PAP1. Involved in seed mucilage production. Activates the transcription of GL2. {ECO:0000269|PubMed:12917293, ECO:0000269|PubMed:12956536, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15590742}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By UV treatment. Negatively regulated by MYB66/WER, GL3 and BHLH2 in the developing non-hair cells, and positively regulated by CPC and TRY in the developing hair cells. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:15590742}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AF027732 | 0.0 | AF027732.1 Arabidopsis thaliana bHLH protein (Atmyc-2) mRNA, complete sequence. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Liu Z,Shi MZ,Xie DY
Regulation of anthocyanin biosynthesis in Arabidopsis thaliana red pap1-D cells metabolically programmed by auxins.
Planta, 2014. 239(4): p. 765-81
[PMID:24370633] - Nayidu NK, et al.
Comparison of five major trichome regulatory genes in Brassica villosa with orthologues within the Brassicaceae.
PLoS ONE, 2014. 9(4): p. e95877
[PMID:24755905] - Cheng Y, et al.
Brassinosteroids control root epidermal cell fate via direct regulation of a MYB-bHLH-WD40 complex by GSK3-like kinases.
Elife, 2018.
[PMID:24771765] - Ranocha P,Francoz E,Burlat V,Dunand C
Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
Plant Signal Behav, 2014. 9(11): p. e977734
[PMID:25531128] - Nemie-Feyissa D,Heidari B,Blaise M,Lillo C
Analysis of interactions between heterologously produced bHLH and MYB proteins that regulate anthocyanin biosynthesis: quantitative interaction kinetics by Microscale Thermophoresis.
Phytochemistry, 2015. 111: p. 21-6
[PMID:25659750] - Kwak SH,Song SK,Lee MM,Schiefelbein J
TORNADO1 regulates root epidermal patterning through the WEREWOLF pathway in Arabidopsis thaliana.
Plant Signal Behav, 2015. 10(12): p. e1103407
[PMID:26451798] - Dai X, et al.
A single amino acid substitution in the R3 domain of GLABRA1 leads to inhibition of trichome formation in Arabidopsis without affecting its interaction with GLABRA3.
Plant Cell Environ., 2016. 39(4): p. 897-907
[PMID:26667588] - Friede A, et al.
The Second Intron Is Essential for the Transcriptional Control of the Arabidopsis thaliana GLABRA3 Gene in Leaves.
Front Plant Sci, 2017. 8: p. 1382
[PMID:28848584] - Feng K, et al.
An R2R3-MYB transcription factor, OjMYB1, functions in anthocyanin biosynthesis in Oenanthe javanica.
Planta, 2018. 247(2): p. 301-315
[PMID:28965159] - Wen J, et al.
The C-terminal domains of Arabidopsis GL3/EGL3/TT8 interact with JAZ proteins and mediate dimeric interactions.
Plant Signal Behav, 2018. 13(1): p. e1422460
[PMID:29293407]
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