 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cagra.20992s0002.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
Trihelix |
| Protein Properties |
Length: 593aa MW: 66235.2 Da PI: 6.2717 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.20992s0002.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 91.3 | 9.8e-29 | 67 | 151 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW++qe+laL+++r++m+ ++r+++ k+plWeevs+km+e g+ r++k+Ckek+en+ k++k++keg+ +++ + +t+++fdqlea
Cagra.20992s0002.1.p 67 RWPRQETLALLKIRSDMGIAFRDASVKGPLWEEVSRKMAELGYIRNAKKCKEKFENVYKYHKRTKEGRTGKS--DGKTYRFFDQLEA 151
8********************************************************************964..5557*******85 PP
|
| 2 | trihelix | 105.3 | 4.4e-33 | 390 | 475 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW+k e+ aLi++r++++++++++ k+plWee+s+ mr+ gf+r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
Cagra.20992s0002.1.p 390 RWPKVEIEALIKLRTNLDSKYQENGPKGPLWEEISAGMRRLGFNRNSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 475
8*********************************************************************8.99***********85 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010192 | Biological Process | mucilage biosynthetic process |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 593 aa
Download sequence Send
to blast |
MMQLGGGTPT TATTTAASTA TTTAPPPPPP PPAQSNDSAA TEAAAAAAVG AFEVSEEMNE 60
RGFGGNRWPR QETLALLKIR SDMGIAFRDA SVKGPLWEEV SRKMAELGYI RNAKKCKEKF 120
ENVYKYHKRT KEGRTGKSDG KTYRFFDQLE ALETQSTTSH HHHHNNNNNS SIFSTPPPVT 180
TVLPSVATLP SSSIPPYTLP SFPNISADFL SDNSTSSSSS YSTSSDMDMG GATTNRKKRK 240
RKWKDFFERL MKQVVDKQED LQRKFLEAVE KREHERLVRE ESWRVQEIAR INREHEILAQ 300
ERSMSAAKDA AVMAFLQKLS EKQPNQPQPQ QVRQQMQLNN NNNQQQTPPP PPLPQPIQAL 360
VPTTSDTVKT DNGDQHMAPA SASGSASSSR WPKVEIEALI KLRTNLDSKY QENGPKGPLW 420
EEISAGMRRL GFNRNSKRCK EKWENINKYF KKVKESNKKR PEDSKTCPYF HQLDALYRER 480
NKFHSSSNNN NIASSSSASG LVKPDNSVPL MVQPEQQWPP APVTATVTAA VAAAQQPDQH 540
PQPSDQNFDD EEGTEEEYEE DEDEDEENEE EEGGEFELVP SSNNTNKTTN NL*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 235 | 240 | RKKRKR |
| 2 | 235 | 241 | RKKRKRK |
| 3 | 236 | 241 | KKRKRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC079283 | 0.0 | AC079283.4 Arabidopsis thaliana chromosome 1 BAC F7O12 genomic sequence, complete sequence. |
| GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
