PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2007s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 174aa    MW: 18978.9 Da    PI: 6.3516
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2007s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.3e-16103151153
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                          +++kGVr ++ +g+W AeI+dps    r r +lg+f tae+Aa+a+++a+  l
  Cagra.2007s0001.1.p 103 KKHKGVRKKP-SGKWSAEIWDPSL---RVRRWLGTFSTAEMAAQAYEEAAAGL 151
                          589****999.7*********954...4999******************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.36104165IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-14104155IPR016177DNA-binding domain
SMARTSM003801.2E-26104168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-19104155IPR001471AP2/ERF domain
PfamPF008475.7E-8104149IPR001471AP2/ERF domain
PRINTSPR003671.0E-6105116IPR001471AP2/ERF domain
CDDcd000186.07E-13107136No hitNo description
PRINTSPR003671.0E-6127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MNYLQFDHTK NEYSENIPSN DQTESLTHPR PSSSSYLTRD QEHGIMVTAL RQVISNSGSD  60
TSSNCIAGET LLSPDAGPCP LCGVTGCYGC AFRQGREEIK EEKKHKGVRK KPSGKWSAEI  120
WDPSLRVRRW LGTFSTAEMA AQAYEEAAAG LVGRRLARRG TENGEAGSHE GDD*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2007s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281152.21e-117ethylene-responsive transcription factor ERF120
SwissprotQ38Q402e-64EF122_ARATH; Ethylene-responsive transcription factor ERF122
TrEMBLR0GNY41e-115R0GNY4_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.2007s0001.1.p1e-128(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67000.15e-47ERF family protein