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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.1876s0007.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
ARF |
Protein Properties |
Length: 700aa MW: 77230.4 Da PI: 7.57 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.1876s0007.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 76.3 | 3.4e-24 | 115 | 216 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF
Cagra.1876s0007.1.p 115 FAKTLTQSDANNGGGFSVPRYCAETIfprldytAEPPVQ--TVIAKDIHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFL 202
89****************************987555555..8************************************************ PP
E-SSSEE..EEEEE-S CS
B3 84 ldgrsefelvvkvfrk 99
+++++ l+v+++r+
Cagra.1876s0007.1.p 203 --RSESGDLCVGIRRA 216
..4589999****997 PP
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2 | Auxin_resp | 114.6 | 8.9e-38 | 276 | 359 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83
a+ +a+ +++FevvY+Prast+eF+vk+++v++a++++++ GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
Cagra.1876s0007.1.p 276 AVARAACGQAFEVVYYPRASTPEFCVKAADVRSAMRIRWCSGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 359
56778899**************************************************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 700 aa
Download sequence Send
to blast |
MEQEKSLDPQ LWHACAGSMV QIPSVNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV 60 SVKFLADAET DEVFSKITLL PLPGNDLDLD NDAVLGLTPP PSDVNVNGNE KPASFAKTLT 120 QSDANNGGGF SVPRYCAETI FPRLDYTAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL 180 TTGWSTFVNQ KKLIAGDSIV FLRSESGDLC VGIRRAKRGG LGSNGLASDN NPYPGFSGFL 240 RDDETTSKLM MMKRNGGNEG NTAGAGRVRV EAVAEAVARA ACGQAFEVVY YPRASTPEFC 300 VKAADVRSAM RIRWCSGMRF KMAFETEDSS RISWFMGTVS AVQVADPIRW PNSPWRLLQV 360 AWDEPDLLQN VKRVSPWLVE LVSNMPAIHL SPFSPRKKIR MPQPFEFPFD GTKFPIFSPG 420 FASNGAGESV CYLSNDNNNA PAGIQGARQA QAQQLFGSPS PSLLSDLNLS SYSGNNKLQS 480 PAMFLSGFNP RHHYDSIVSR QGRDMENGNN ISCSLTMGNP SMVQDKKKSG GSVKTHQFLL 540 FGQPILTEQQ VMNRKRSLEE EAEAREEKGS AARGLTWNYG FQGLETGHCK VFMESEDVGR 600 TLDLSVIGSY QELYRKLAEM FHIEERLDLL THVVYQDANN VTKRIGDEPF SDFMRATKRL 660 TIKMDIGGDN VRKTWITGIR NGENGIDASA KTGPLSIFA*
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Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF325073 | 0.0 | AF325073.1 Arabidopsis thaliana unknown protein (At2g28350) mRNA, complete cds. |
GenBank | AF336919 | 0.0 | AF336919.1 Arabidopsis thaliana clone C00034 (b) auxin response factor 10 (At2g28350) mRNA, complete cds. |
Publications
? help Back to Top |
- Yang ZB, et al.
TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis. Plant Cell, 2014. 26(7): p. 2889-904 [PMID:25052716] - Bennett T,van den Toorn A,Willemsen V,Scheres B
Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342] - Ye Y, et al.
Germostatin resistance locus 1 encodes a PHD finger protein involved in auxin-mediated seed dormancy and germination. Plant J., 2016. 85(1): p. 3-15 [PMID:26611158] - Nguyen TC,Obermeier C,Friedt W,Abrams SR,Snowdon RJ
Disruption of Germination and Seedling Development in Brassica napus by Mutations Causing Severe Seed Hormonal Imbalance. Front Plant Sci, 2016. 7: p. 322 [PMID:27014334] - Liu Z, et al.
Repression of callus initiation by the miRNA-directed interaction of auxin-cytokinin in Arabidopsis thaliana. Plant J., 2016. 87(4): p. 391-402 [PMID:27189514] - Wójcikowska B,Gaj MD
Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis. Plant Cell Rep., 2017. 36(6): p. 843-858 [PMID:28255787] - Wójcik AM,Nodine MD,Gaj MD
miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis. Front Plant Sci, 2017. 8: p. 2024 [PMID:29321785] - Lin JS, et al.
MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis. Front Plant Sci, 2018. 9: p. 68 [PMID:29449855]
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