PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.17733s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 208aa MW: 23646.6 Da PI: 9.5172 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.6e-16 | 7 | 51 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg WT+ d++l+++v+ +G + W++Ia++m+ +Rt+k+c+ rw++ Cagra.17733s0003.1.p 7 RGHWTESQDLKLKELVEAHGLEKWDLIAKEMQ-TRTPKSCRVRWFN 51 899*****************************.***********98 PP | |||||||
2 | Myb_DNA-binding | 43.3 | 8.4e-14 | 60 | 103 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T eE+++++ + +G+ W++Ia+++ gR+++++k +w+ y Cagra.17733s0003.1.p 60 APFTLEEEDIIISTHSYYGNQ-WAKIAKHLK-GRSENDVKKHWNHY 103 68*****************99.********9.************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.022 | 1 | 53 | IPR017930 | Myb domain |
SMART | SM00717 | 7.7E-14 | 6 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-15 | 7 | 51 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.25E-27 | 7 | 100 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-22 | 8 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.10E-13 | 10 | 51 | No hit | No description |
PROSITE profile | PS51294 | 22.052 | 54 | 108 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-11 | 58 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-12 | 60 | 103 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-19 | 61 | 106 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.84E-9 | 61 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MSAPGSRGHW TESQDLKLKE LVEAHGLEKW DLIAKEMQTR TPKSCRVRWF NQVDPTLNRA 60 PFTLEEEDII ISTHSYYGNQ WAKIAKHLKG RSENDVKKHW NHYVNRPAWR SHTKTKKSFF 120 TASLNPYGYH VPGNPSYEGM RYEETTNLSA HHQQFPIFPG GGSLAPLSTQ LSISQPSPAP 180 EAEDVMIRKT PKFIDFLGVG ESSRNNL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-25 | 7 | 108 | 7 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 90 | KHLKGR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.17733s0003.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006285370.2 | 1e-154 | transcription factor MYB117 | ||||
TrEMBL | R0H408 | 1e-94 | R0H408_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.17733s0003.1.p | 1e-155 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17330 | 3 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 2e-38 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.17733s0003.1.p |