PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1757s0024.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bHLH | ||||||||
Protein Properties | Length: 369aa MW: 40723.8 Da PI: 7.0057 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26 | 1.7e-08 | 279 | 319 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P +K++ a++L +A +Y+k L Cagra.1757s0024.1.p 279 ARQRRERISEKIRVLQTLVPGG-----TKMDTASMLDEAANYLKFL 319 69******************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.123 | 270 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-13 | 275 | 330 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.6E-13 | 276 | 325 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.14E-11 | 276 | 324 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.7E-12 | 278 | 328 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.4E-6 | 279 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MCSAVITTRI AFDLMEGLES VYAQAMYGMS RESKIMEHQG SDLIWGGNEL MMARGLCSSS 60 SSYHHQLINP NLSSCFMSDL GVIGEVQQQQ HVGNRAGSID PSSLDCLLSA TSNSNNTSTE 120 DDEGISVLFS DSQTLWSFGG VSSAESENRE ITTETKTTAI KPKSLKRNRG GDEKGSHFRL 180 VRPQDDSEKG GFKLIYDENQ SKSKKPRTEK ERGGSSNISF QHSTCVSDNA EPDAEAIAQM 240 KEMIYRAAAF RPVNFGLEIV EKPKRKNVKI STDPQTVAAR QRRERISEKI RVLQTLVPGG 300 TKMDTASMLD EAANYLKFLR SQVKALENLR PKIDPTNLSF SSAPPTFPLF HPSFLPLQNP 360 NQIHHPES* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 279 | 284 | RQRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1757s0024.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488617 | 0.0 | AF488617.1 Arabidopsis thaliana clone bHLH087 putative bHLH transcription factor mRNA, complete cds. | |||
GenBank | AP001305 | 0.0 | AP001305.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MHC9. | |||
GenBank | BT020364 | 0.0 | BT020364.1 Arabidopsis thaliana At3g21330 gene, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006297948.1 | 0.0 | transcription factor bHLH87 | ||||
Swissprot | Q8S3D2 | 0.0 | BH087_ARATH; Transcription factor bHLH87 | ||||
TrEMBL | R0G609 | 0.0 | R0G609_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1757s0024.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7960 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21330.1 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1757s0024.1.p |
Publications ? help Back to Top | |||
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