PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cagra.17254s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 99aa MW: 11251.1 Da PI: 10.4216 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.3 | 8.9e-11 | 8 | 92 | 2 | 88 |
EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 +k+lt sd ++++rl++pkk +e++ ++++++++ + d g +s+ v++ ++ y++++GW + a +L+ g ++ ++ ++ Cagra.17254s0001.1.p 8 EKTLTDSDLSNNNRLRIPKKMVENItkstgVPIPRKGIQVEIVD--GnKSYWVNM-----GQDYIMGSGWASLNAARQLQKGNIIKLYWQK 91 799*******************9889997633445665555555..425666677.....678**********************999433 PP SS CS B3 87 rs 88 + Cagra.17254s0001.1.p 92 -T 92 .3 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-10 | 3 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.46E-13 | 5 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.26E-10 | 6 | 96 | No hit | No description |
Pfam | PF02362 | 2.2E-8 | 8 | 93 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 99 aa Download sequence Send to blast |
MNQDLMIEKT LTDSDLSNNN RLRIPKKMVE NITKSTGVPI PRKGIQVEIV DGNKSYWVNM 60 GQDYIMGSGW ASLNAARQLQ KGNIIKLYWQ KTKFIFSM* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Cagra.17254s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006289275.1 | 1e-54 | B3 domain-containing protein At1g08985 | ||||
Swissprot | Q8GWU1 | 7e-37 | Y1898_ARATH; B3 domain-containing protein At1g08985 | ||||
TrEMBL | R0HEH1 | 2e-53 | R0HEH1_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.17254s0001.1.p | 4e-66 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14170 | 12 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08985.1 | 3e-39 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cagra.17254s0001.1.p |