PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1671s0119.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C3H | ||||||||
Protein Properties | Length: 410aa MW: 45112.6 Da PI: 7.7616 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.7 | 6.2e-11 | 49 | 74 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f++rtG C yG++C+++H+ Cagra.1671s0119.1.p 49 PGERDCQFYLRTGLCGYGSSCRYNHP 74 5789*********************9 PP | |||||||
2 | zf-CCCH | 36.5 | 8e-12 | 94 | 118 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tG CkyG++Ck++H++ Cagra.1671s0119.1.p 94 QPDCEYFLKTGACKYGSTCKYHHPK 118 789********************96 PP | |||||||
3 | zf-CCCH | 37.2 | 4.8e-12 | 140 | 163 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C++++rtGtC++G CkF+H++ Cagra.1671s0119.1.p 140 KPCPYYLRTGTCRFGVACKFHHPQ 163 69********************97 PP | |||||||
4 | zf-CCCH | 39.9 | 6.8e-13 | 265 | 288 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++Crff+ tGtCkyGd Ck++H+ Cagra.1671s0119.1.p 265 QPECRFFMNTGTCKYGDDCKYNHP 288 799********************8 PP | |||||||
5 | zf-CCCH | 26.4 | 1.2e-08 | 309 | 333 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ++++ C +f+ +G+Ck+G++CkF H Cagra.1671s0119.1.p 309 PGQPACGNFRSYGFCKFGPNCKFDH 333 57899******************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.361 | 48 | 76 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-5 | 48 | 75 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-8 | 50 | 74 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.05E-5 | 52 | 76 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-4 | 54 | 73 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.896 | 91 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-6 | 91 | 118 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-9 | 94 | 118 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-6 | 96 | 119 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-4 | 97 | 117 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 136 | 163 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.469 | 136 | 164 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 137 | 164 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-5 | 140 | 162 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.7E-10 | 140 | 163 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.601 | 262 | 290 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.4E-7 | 263 | 289 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-10 | 265 | 288 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-6 | 266 | 288 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-5 | 268 | 287 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 304 | 334 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.99 | 308 | 336 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-4 | 308 | 335 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.1E-7 | 310 | 333 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MRPMSSDETQ HLQSSLVSIP SSDNLQDAFT KLKVNDNGVA ESKPYPDRPG ERDCQFYLRT 60 GLCGYGSSCR YNHPTNLPQG VAYYKEELPE RIGQPDCEYF LKTGACKYGS TCKYHHPKDR 120 NGAEPVLFNV IGLPMRKGAK PCPYYLRTGT CRFGVACKFH HPQLDNGHST AYEMPSFPST 180 GLQYASGLTM MSTYGTLPRQ QVPQSYVPIM IPPSQGLLPP QGWGTYMAAS NPMYNVKNQP 240 YYSGSSASVP VAVQLNPGSP ESSDQPECRF FMNTGTCKYG DDCKYNHPGV RMSPPLPSLI 300 NPFVLPARPG QPACGNFRSY GFCKFGPNCK FDHQMLPYPG LSMPSSLATP YASPVSTHER 360 ISSRSDSKSL SNGKPDVKKQ SSETDKPDYD SEQLDNSEVH DLSENSSST* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1671s0119.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493434 | 0.0 | AB493434.1 Arabidopsis thaliana At1g04990 mRNA for hypothetical protein, partial cds, clone: RAAt1g04990. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023632804.1 | 0.0 | zinc finger CCCH domain-containing protein 3 | ||||
Swissprot | Q94AD9 | 0.0 | C3H3_ARATH; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | R0IT74 | 0.0 | R0IT74_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1671s0119.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2380 | 26 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1671s0119.1.p |
Publications ? help Back to Top | |||
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