PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cagra.1642s0089.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 27187.8 Da PI: 6.5041 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 57.1 | 3.3e-18 | 62 | 114 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r+ +hn+ Er RR++iNs f+ Lr++lP+ + +skKls ++++ +A +YI +Lq Cagra.1642s0089.1.p 62 RKLNHNASERDRRKKINSMFSSLRSCLPPsN---QSKKLSVSATVSQALKYIPELQ 114 6889*************************66...*******************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.71E-17 | 60 | 117 | No hit | No description |
PROSITE profile | PS50888 | 15.548 | 61 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.1E-16 | 62 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.16E-18 | 62 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-15 | 62 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-15 | 67 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence Send to blast |
MCALVPSLFP SFGWPCGDHS FYENDDLTNA FLDFPLPDLT VAHQNVLPEK NRTLLDNPVV 60 MRKLNHNASE RDRRKKINSM FSSLRSCLPP SNQSKKLSVS ATVSQALKYI PELQEQVKKL 120 IKKKEELSYQ ISGQRDLVYT EQNGKPEKGV TSYTSAVSAT RLGETEVMVQ ISSLQTGNCS 180 FGNVLSGVEE DGLVLVDASS SRSQGERLFY TLHLWMDSCK LNSEELSDRL CFLYEKCDNS 240 CK* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Plays a role in metal homeostasis. Confers tolerance to high zinc (Zn) and nickel (Ni). {ECO:0000269|PubMed:18088336}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Cagra.1642s0089.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up regulated by iron deficiency in roots and leaves, as well as by nickel, high zinc or high copper treatments. Repressed by heat treatment, high iron, low copper and low zinc treatments. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:17516080, ECO:0000269|PubMed:18088336}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB493585 | 0.0 | AB493585.1 Arabidopsis thaliana At2g41240 mRNA for hypothetical protein, partial cds, clone: RAAt2g41240. | |||
GenBank | AY074635 | 0.0 | AY074635.1 Arabidopsis thaliana At2g41240/F13H10.21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006294890.1 | 1e-172 | transcription factor bHLH100 | ||||
Swissprot | Q9ZVB5 | 1e-138 | BH100_ARATH; Transcription factor bHLH100 | ||||
TrEMBL | R0HUL7 | 1e-171 | R0HUL7_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1642s0089.1.p | 1e-180 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM482 | 28 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G41240.1 | 1e-140 | basic helix-loop-helix protein 100 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cagra.1642s0089.1.p |