PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1629s0073.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 582aa    MW: 64246.4 Da    PI: 7.2672
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1629s0073.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-152976148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+ Ede+l+ +v++ G g+W+++ +  g+ R++k+c++rw ++l
  Cagra.1629s0073.1.p 29 KGPWTAAEDEILAAYVRENGEGNWNAVQKNTGLARCGKSCRLRWANHL 76
                         79******************************************9986 PP
2Myb_DNA-binding48.12.8e-1582125146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g++T eE+ l++++++qlG++ W++ a+ ++ gRt++++k++w++
  Cagra.1629s0073.1.p  82 KGSFTGEEERLIIQLHAQLGNK-WARMAAQLP-GRTDNEIKNYWNT 125
                          799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3172476IPR017930Myb domain
SuperFamilySSF466893.09E-2828123IPR009057Homeodomain-like
SMARTSM007171.6E-122878IPR001005SANT/Myb domain
PfamPF002492.6E-142976IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-223083IPR009057Homeodomain-like
CDDcd001673.79E-103176No hitNo description
PROSITE profilePS5129425.06977131IPR017930Myb domain
SMARTSM007176.2E-1681129IPR001005SANT/Myb domain
PfamPF002495.8E-1482125IPR001005SANT/Myb domain
CDDcd001672.79E-1184127No hitNo description
Gene3DG3DSA:1.10.10.609.9E-2584129IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MMMYGGGGGA GKDGGSTNHT SDGGVILKKG PWTAAEDEIL AAYVRENGEG NWNAVQKNTG  60
LARCGKSCRL RWANHLRPNL KKGSFTGEEE RLIIQLHAQL GNKWARMAAQ LPGRTDNEIK  120
NYWNTRLKRL QRQGLPLYPP DIIPNHQLHP HPHHQQHQQH NHHQQHHQQM YFQPQSSQPN  180
TPSSSPLPSP RPLNANANSS SSFTFHTTTA NLLHPLSPHT PNTPQTPSQL SSTPPPPPLS  240
SPLSSPRNNQ YPTLPLFALP RSQINNNDAN FTFPRPPPLL QQQPSSLLAK RYNNANTPLN  300
CINRVSTAPF SPVSRESYTS FLTLPYPSPT AQTATYHNTN SHYSSSPSFS LNPSSSYPTS  360
TSSPSFLHSH YSPSSTSFPT NPVYSMKQDQ LPSNQIPQIE AFNNFNSFTD NERQNHNLNS  420
SGVHNHRRSS SCSLLEDVLE EAEVLAAGGR GRPLKRRQLT ASPPNHHNND NDNFFSVSFG  480
DYDSSDNICS LQDLKSKEEE SLHINTMQED IAKLLDWGSD SGEISNGQSS VVTDDNLVLD  540
VHHLASLFPA DSTTAVATAT NDQHNNNNNN NCSWDDMQGL S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-29261291103C-Myb DNA-Binding Domain
1msf_C2e-29261291103C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1451456RPLKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB97 and MYB101, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250|UniProtKB:O80883, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1629s0073.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in pollen tube 4 hours after pollen germination. {ECO:0000269|PubMed:19714218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5440140.0KC544014.1 Arabidopsis thaliana transcription factor MYB120 (MYB120) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006279592.20.0transcription factor MYB120
SwissprotQ94FL70.0MY120_ARATH; Transcription factor MYB120
TrEMBLR0GJN20.0R0GJN2_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.1629s0073.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99391934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55020.18e-87myb domain protein 120
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]