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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cagra.1629s0040.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
bHLH |
| Protein Properties |
Length: 235aa MW: 25573 Da PI: 8.8356 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.1629s0040.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 36.7 | 7.3e-12 | 75 | 122 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
++ rE++RRdr+N++f eL +l + + +K +Ka+iL Av+ + +L
Cagra.1629s0040.1.p 75 SKACREKQRRDRLNDKFMELGAILEPG---NPPKTDKAAILVDAVRMVTQL 122
5678**********************8...78**************99988 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 235 aa
Download sequence Send
to blast |
MVSPENANWI CDLIDADYGS FTIQGPGFSW PVQQPIGVSS NSSIGVDGSA GNSEASKEPG 60
SKKRGRCESS SANSSKACRE KQRRDRLNDK FMELGAILEP GNPPKTDKAA ILVDAVRMVT 120
QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKT MNAPQPSFFP 180
APPMMPTAFA SAQGQAPGNK MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF488629 | 0.0 | AF488629.1 Arabidopsis thaliana clone bHLH105 putative bHLH transcription factor mRNA, complete cds. |
| GenBank | AY054585 | 0.0 | AY054585.1 Arabidopsis thaliana Unknown protein (At5g54680; K5F14.2) mRNA, complete cds. |
| GenBank | BT002189 | 0.0 | BT002189.1 Arabidopsis thaliana Unknown protein (At5g54680) mRNA, complete cds. |
| Publications
? help Back to Top |
- Li X,Zhang H,Ai Q,Liang G,Yu D
Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana.
Plant Physiol., 2016. 170(4): p. 2478-93
[PMID:26921305] - Aparicio F,Pallás V
The coat protein of Alfalfa mosaic virus interacts and interferes with the transcriptional activity of the bHLH transcription factor ILR3 promoting salicylic acid-dependent defence signalling response.
Mol. Plant Pathol., 2017. 18(2): p. 173-186
[PMID:26929142] - Liang G,Zhang H,Li X,Ai Q,Yu D
bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
J. Exp. Bot., 2017. 68(7): p. 1743-1755
[PMID:28369511] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470] - Li B, et al.
Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
Plant Cell, 2018. 30(1): p. 178-195
[PMID:29317470] - Min JH, et al.
Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
Front Plant Sci, 2017. 8: p. 2100
[PMID:29321786] - Samira R, et al.
The bHLH transcription factor ILR3 modulates multiple stress responses in Arabidopsis.
Plant Mol. Biol., 2018. 97(4-5): p. 297-309
[PMID:29882068]
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