PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1390s0021.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 273aa    MW: 31409.7 Da    PI: 5.2069
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1390s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.8e-1790142456
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          + +++ eq+++Le+ Fe  +++  e++ +LAk lg++ rq+ +WFqNrRa++k
  Cagra.1390s0021.1.p  90 KKRLQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWK 142
                          4457889*********************************************9 PP
2HD-ZIP_I/II118.53.7e-3888176189
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                          ekk+rl+ eqvk+LE+sFe  +kLeperK +la++Lg+qprq+a+WFqnrRAR+kt+qlE+dy++Lk+++++lk +n++L + +++L +
  Cagra.1390s0021.1.p  88 EKKKRLQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERDYDSLKKQFESLKFDNDSLLAYNKKLLA 176
                          69********************************************************************************9999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.11584144IPR001356Homeobox domain
SuperFamilySSF466892.44E-1886146IPR009057Homeodomain-like
SMARTSM003894.6E-1687148IPR001356Homeobox domain
CDDcd000861.55E-1589145No hitNo description
PfamPF000461.1E-1490142IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.1E-1892152IPR009057Homeodomain-like
PRINTSPR000312.9E-5115124IPR000047Helix-turn-helix motif
PROSITE patternPS000270119142IPR017970Homeobox, conserved site
PRINTSPR000312.9E-5124140IPR000047Helix-turn-helix motif
PfamPF021834.7E-10145178IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MYVFDPNADA DAGLSLEMAF PQHGFMFQQL HEDTSQDQLP SCPPHLFNGG GNYMMNRSMS  60
LMNVQEDHNQ TLDEENLSDD GAHTMLGEKK KRLQLEQVKA LEKSFELGNK LEPERKIQLA  120
KALGMQPRQI AIWFQNRRAR WKTRQLERDY DSLKKQFESL KFDNDSLLAY NKKLLAEREA  180
EASWSNNGST ENSSDINLEL PRETTTTHVN TIKDLFPSSI RSSAHRDDDQ NHEIVQEESL  240
CNMFNGIDET TSSAGYWAWS DPNHNHHHHQ FN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00322DAPTransfer from AT3G01220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1390s0021.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288900.0AK228890.1 Arabidopsis thaliana mRNA for putative homeobox-leucine zipper protein, complete cds, clone: RAFL16-20-K05.
GenBankAY0876310.0AY087631.1 Arabidopsis thaliana clone 3722 mRNA, complete sequence.
GenBankBT0292210.0BT029221.1 Arabidopsis thaliana At3g01220 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023642332.10.0homeobox-leucine zipper protein ATHB-20
SwissprotQ8LAT01e-178ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLR0G6M40.0R0G6M4_9BRAS; Uncharacterized protein
STRINGCagra.1390s0021.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01220.11e-180homeobox protein 20