PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1383s0073.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | DBB | ||||||||
Protein Properties | Length: 184aa MW: 20078.6 Da PI: 5.5954 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.4 | 2.5e-07 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++ fC ++ lC+ C ++ H Cagra.1383s0073.1.p 4 LCDACENAAAIVFCAADEAALCRACDEKVH 33 6*******9******************998 PP | |||||||
2 | zf-B_box | 26.7 | 1.2e-08 | 52 | 91 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 ++++C+ +e+ ++ ++Ce +++ lC +C + H g H Cagra.1383s0073.1.p 52 NAPCCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrtH 91 789***************************9996555556 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.338 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.58E-7 | 3 | 45 | No hit | No description |
Pfam | PF00643 | 6.5E-6 | 4 | 42 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.6E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.2E-12 | 51 | 96 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.916 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.7E-6 | 52 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.76E-8 | 56 | 96 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MRILCDACEN AAAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE 60 NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR IEFPGDKPKP NNTRDNMQNQ 120 RVSTNANGEA NGKTDDEMID LNANPQRVHE PASNNNGIDV NNENNHEPAG IVPVGPFKRE 180 SEK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1383s0073.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493728 | 0.0 | AB493728.1 Arabidopsis thaliana At4g38960 mRNA for hypothetical protein, partial cds, clone: RAAt4g38960. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006284600.1 | 1e-133 | B-box zinc finger protein 19 isoform X1 | ||||
Swissprot | C0SVM5 | 1e-129 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | R0H216 | 1e-132 | R0H216_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1383s0073.1.p | 1e-132 | (Capsella grandiflora) | ||||
STRING | XP_006284600.1 | 1e-132 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2168 | 24 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 1e-121 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1383s0073.1.p |