PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.11786s0007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | B3 | ||||||||
Protein Properties | Length: 102aa MW: 11631.4 Da PI: 10.102 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.3 | 5.8e-13 | 8 | 96 | 2 | 89 |
EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +k+lt sdv++++rl+lpkk +e++ ++++++++ + d ++ W v++ +++y++++GW + +a++L++gD++ ++ ++ Cagra.11786s0007.1.p 8 EKKLTDSDVSNKARLRLPKKKVENIirstgVPIPRNGIQVEILDNNNSYW-VNF--GVDGSGYFIGSGWINLRDAKHLRTGDIIKLYWEN- 94 79********************998**99855567889999999766666.556..556667***********************99433. PP SE CS B3 88 se 89 ++ Cagra.11786s0007.1.p 95 TK 96 44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.0E-13 | 2 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.59E-15 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.53E-12 | 6 | 99 | No hit | No description |
SMART | SM01019 | 1.9E-7 | 7 | 101 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-10 | 8 | 97 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MDPNMMIEKK LTDSDVSNKA RLRLPKKKVE NIIRSTGVPI PRNGIQVEIL DNNNSYWVNF 60 GVDGSGYFIG SGWINLRDAK HLRTGDIIKL YWENTKFIFS M* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.11786s0007.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006289390.1 | 6e-67 | B3 domain-containing protein At1g08985 | ||||
Swissprot | Q8GWU1 | 7e-47 | Y1898_ARATH; B3 domain-containing protein At1g08985 | ||||
TrEMBL | R0HES1 | 1e-65 | R0HES1_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.11786s0007.1.p | 2e-68 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14170 | 12 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08985.1 | 3e-49 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.11786s0007.1.p |