PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1157s0003.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 365aa MW: 40334.9 Da PI: 6.2581

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1157s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.7	5.1e-14	171	217	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr++lP+ +K +Ka+ L ++++++k+L Cagra.1157s0003.1.p 171 KSHSEAERRRRERINNHLAKLRSILPNT-----TKTDKASLLAEVIQHVKEL 217 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.85	168	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-11	171	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.0E-14	172	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-14	172	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-12	174	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.50E-5	181	220	No hit	No description
Gene3D	G3DSA:3.30.70.260	2.7E-4	257	312	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MCAKKEEEED SSRAMNNIQN YQNDLFFHQL ISHHHHHHDP SQSETFGPSG NVGSGFTILS 60 QDSVSPIWSL PPTTSIQPPF DQFPPPSSTP GSFYGSFFNR SRAHHQGVQF GYEGFGGATS 120 AAHHHHEQLR ILSEALGPVV QAGSGPFGLQ AELGKMTAQE IMDAKALAAS KSHSEAERRR 180 RERINNHLAK LRSILPNTTK TDKASLLAEV IQHVKELKRE TSVISETNLV PTESDELTVA 240 FTEEEDTGDG RFVIKASLCC EDRSDLLPDM IKTLKAMRLK TLKAEITTVG GRVKNVLFVT 300 GEESSGEEVE EEYCIGTIEE ALKAVMEKSN VEESSSSGNA KRQRMSSHNT ITIVEQQQQH 360 HHQR*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MCAKKEEEED SSRAMNNIQN YQNDLFFHQL ISHHHHHHDP SQSETFGPSG NVGSGFTILS  60
QDSVSPIWSL PPTTSIQPPF DQFPPPSSTP GSFYGSFFNR SRAHHQGVQF GYEGFGGATS  120
AAHHHHEQLR ILSEALGPVV QAGSGPFGLQ AELGKMTAQE IMDAKALAAS KSHSEAERRR  180
RERINNHLAK LRSILPNTTK TDKASLLAEV IQHVKELKRE TSVISETNLV PTESDELTVA  240
FTEEEDTGDG RFVIKASLCC EDRSDLLPDM IKTLKAMRLK TLKAEITTVG GRVKNVLFVT  300
GEESSGEEVE EEYCIGTIEE ALKAVMEKSN VEESSSSGNA KRQRMSSHNT ITIVEQQQQH  360
HHQR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	181	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1157s0003.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY072161	0.0	AY072161.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds.
GenBank	AY122983	0.0	AY122983.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006302435.1	0.0	transcription factor bHLH30
Swissprot	Q9S7Y1	0.0	BH030_ARATH; Transcription factor bHLH30
TrEMBL	R0IF05	0.0	R0IF05_9BRAS; Uncharacterized protein
STRING	Cagra.1157s0003.1.p	0.0	(Capsella grandiflora)
STRING	XP_006302435.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7048	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cagra.1157s0003.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]