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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.1111s0025.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
MYB |
Protein Properties |
Length: 292aa MW: 33902.8 Da PI: 6.5093 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.1111s0025.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 54.6 | 2.4e-17 | 24 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT eEd ll ++v G g+W+ +a++ g++Rt+k+c++rw++yl
Cagra.1111s0025.1.p 24 RGPWTLEEDTLLTNYVLHNGEGRWNHVAKCAGLKRTGKSCRLRWLNYL 71
89********************************************97 PP
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2 | Myb_DNA-binding | 51.9 | 1.8e-16 | 77 | 120 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
Cagra.1111s0025.1.p 77 RGNLTPQEQLLILELHSKWGNR-WSKIAQYLP-GRTDNEIKNYWRT 120
7999******************.*********.***********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 292 aa
Download sequence Send
to blast |
MDNSMKKKKS FIKESDHQDV ELRRGPWTLE EDTLLTNYVL HNGEGRWNHV AKCAGLKRTG 60 KSCRLRWLNY LKPDIRRGNL TPQEQLLILE LHSKWGNRWS KIAQYLPGRT DNEIKNYWRT 120 RVQKQARQLN IESNSDKFFD AVRSFWVPRL MEKMEQNSST TTYCCPQSNN NNNSLLLPSQ 180 SQDSMMSSTI QKDKDFSSQN LSLSNMDSSS TSTWAVPHFM DHNNTNIIDS SMCFHQGNDQ 240 ELGGYVPIGM ENYLGNSDIS MECHVADGYS TYEDVTQDPM WNMDDIWQFR E*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY519568 | 0.0 | AY519568.1 Arabidopsis thaliana MYB transcription factor (At1g68320) mRNA, complete cds. |