PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.10399s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C2H2 | ||||||||
Protein Properties | Length: 344aa MW: 39041.2 Da PI: 6.8069 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.3 | 5.7e-05 | 187 | 206 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Cagra.10399s0008.1.p 187 FTCPLCFKTFNRYNNMQMHM 206 89*****************9 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.0003 | 271 | 293 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk F k + ++H +++ Cagra.10399s0008.1.p 271 FACRRCGKAFAVKGDWRTHEKNC 293 78*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.66 | 187 | 214 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.4E-5 | 187 | 206 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 189 | 209 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.19E-6 | 257 | 291 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 258 | 291 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.767 | 271 | 291 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MSDPACVFNN GYVDYYDYSF NYSTSLSRIY DSHGNFYYPH HTTSPNINTN HNPTSPDSPP 60 LREALPLLSL SPIHKHQEPI AHHHEHYFME MTTETSSNSN FLDHELDHNE VTVDLHLGLP 120 NFGDGGSSSS DVVLDSTDDQ EHHQDQGVEF ALASDHDDGH GGLQRGNHLH HFWIPTPSQI 180 LMGPTQFTCP LCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTAMLK LPCYCCAPGC 240 KNNIDHPRAR PLKDFRTLQT HYKRKHGVRP FACRRCGKAF AVKGDWRTHE KNCGKLWYCS 300 CGSDFKHKRS LKDHVKAFGN GHVPCCGIDH EEEDAASDVE HQE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.10399s0008.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ311811 | 0.0 | AJ311811.2 Arabidopsis thaliana mRNA for WIP4 protein (At3g20880 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006300196.1 | 0.0 | zinc finger protein WIP4 | ||||
Swissprot | Q8W030 | 0.0 | ZWIP4_ARATH; Zinc finger protein WIP4 | ||||
TrEMBL | R0HTF9 | 0.0 | R0HTF9_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.10399s0008.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20880.1 | 0.0 | WIP domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.10399s0008.1.p |
Publications ? help Back to Top | |||
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