PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0917s0051.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bHLH | ||||||||
Protein Properties | Length: 294aa MW: 33421.7 Da PI: 9.3376 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.1 | 6.5e-13 | 101 | 152 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ L++ +P + +s+ + a+i e +++Y+k+L+ Cagra.0917s0051.1.p 101 QRMNHIAIERNRRRQMNHFLSVLKSSMPLS---YSQPSDQASIIEGTINYVKKLE 152 79****************************...*******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.42E-12 | 98 | 156 | No hit | No description |
SuperFamily | SSF47459 | 1.31E-16 | 99 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.85 | 100 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-10 | 101 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.0E-13 | 101 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-8 | 106 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MMFQQEYPYG FSLVESSLNY EILDFFQNTV FSNSEDLKSS KQNNSLSSTT LSCSIAEQQS 60 HSTQNLSSLR PRCGSSDDDV PTRKRTRRTR SDKKIEDKEN QRMNHIAIER NRRRQMNHFL 120 SVLKSSMPLS YSQPSDQASI IEGTINYVKK LEQLLQSLEA QSKATKPNES PNIFSSFFMF 180 PQYSTATASS FSSSHHHQKK LTAVADVEVT MVERHANIKV LTKTRPRLLF KMINEFYSLG 240 LSTLHLNLTT CKSKDMSLFT FGVKVEASCQ LTPSINEIAN GVHEVVRRIH EES* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 101 | 112 | RMNHIAIERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0917s0051.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY070095 | 1e-161 | AY070095.1 Arabidopsis thaliana unknown protein (At5g65320) mRNA, complete cds. | |||
GenBank | AY096704 | 1e-161 | AY096704.1 Arabidopsis thaliana unknown protein (At5g65320) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006281758.1 | 0.0 | transcription factor bHLH99 | ||||
Swissprot | Q9FKQ6 | 1e-133 | BH099_ARATH; Transcription factor bHLH99 | ||||
TrEMBL | R0F081 | 0.0 | R0F081_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0917s0051.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14959 | 16 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65320.1 | 1e-120 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0917s0051.1.p |
Publications ? help Back to Top | |||
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