PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0917s0046.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 290aa MW: 32032.5 Da PI: 6.414 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 100.8 | 9.4e-32 | 73 | 126 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ++r++eClkN+A+++GghavDGCgEfmp+ g egt++alkCaACgCHRnFHR+e Cagra.0917s0046.1.p 73 RFRFRECLKNQAVNIGGHAVDGCGEFMPA-GIEGTIDALKCAACGCHRNFHRKEL 126 789*************************9.999********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.5E-28 | 74 | 125 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.5E-29 | 75 | 125 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-24 | 75 | 126 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.415 | 76 | 125 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE pattern | PS00028 | 0 | 112 | 136 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:1.10.10.60 | 8.3E-31 | 185 | 257 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.18E-18 | 185 | 257 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.1E-26 | 196 | 252 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0010431 | Biological Process | seed maturation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MEFEDNNNNN NEEEQEDDMN LHEEEEEDDA VYDSPPLSRG VVKASTESHE TTGTTSTGGG 60 GGFMVVHGGG GSRFRFRECL KNQAVNIGGH AVDGCGEFMP AGIEGTIDAL KCAACGCHRN 120 FHRKELPYFH HAPPQHQAPP PPPPGFYRLP APVSYRPPPS QAPPLQLALP PPQRERSEDP 180 METSSAEAGG GGGGIRKRFR TKFTAEQKER MLALAERIGW RIQRQDDEVI QRFCQETGVP 240 RQVLKVWLHN NKHTLGKSPP PLLHHHHHQP PPTTTTAPQS SFHHEQDQP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 3e-35 | 195 | 254 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00588 | DAP | Transfer from AT5G65410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0917s0046.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB011479 | 0.0 | AB011479.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNA5. | |||
GenBank | BT002385 | 0.0 | BT002385.1 Arabidopsis thaliana putative protein (At5g65410) mRNA, complete cds. | |||
GenBank | BT006304 | 0.0 | BT006304.1 Arabidopsis thaliana At5g65410 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002864955.1 | 1e-144 | zinc-finger homeodomain protein 1 | ||||
Swissprot | Q9FKP8 | 1e-141 | ZHD1_ARATH; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | D7MTX9 | 1e-142 | D7MTX9_ARALL; Uncharacterized protein | ||||
STRING | Cagra.0917s0046.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13237 | 17 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65410.1 | 1e-106 | homeobox protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0917s0046.1.p |
Publications ? help Back to Top | |||
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