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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cagra.0917s0023.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
bHLH |
| Protein Properties |
Length: 352aa MW: 39496.2 Da PI: 4.5422 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.0917s0023.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 38.4 | 2.2e-12 | 180 | 223 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
++ErrRR+r+N++++ Lr+++Pk + K++ +iL A++Y+k+L
Cagra.0917s0023.1.p 180 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDAIDYMKEL 223
589*********************66......****************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 352 aa
Download sequence Send
to blast |
MELSRQMNVF EELLVPTKQE TTDNNMNNLS FNGGFDHHHQ FFPNGYSIDY LCFNNEEEDE 60
NTLLYPSSFM DLISQPPPLL LHQPPLLQPP SPPLSSSAAT AAATFDYPFL EALQEIIDSS 120
SSSPPLILQN GQEENFNNPT SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL 180
MAERRRRKRL NDRLSMLRSI VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS 240
NNSHHSKLFG DLKDLNTNEP MVRNSPKFEI DRRDEDTRVD ICCSPKPGLL LSTVNTLETL 300
GLEIEQCVIS CFSDFSLQAS CSEGAEQRDF ITSEDIKQAL FRNAGYGGSC L*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5gnj_A | 1e-12 | 175 | 253 | 5 | 83 | Transcription factor MYC2 |
| 5gnj_B | 1e-12 | 175 | 253 | 5 | 83 | Transcription factor MYC2 |
| 5gnj_E | 1e-12 | 175 | 253 | 5 | 83 | Transcription factor MYC2 |
| 5gnj_F | 1e-12 | 175 | 253 | 5 | 83 | Transcription factor MYC2 |
| 5gnj_G | 1e-12 | 175 | 253 | 5 | 83 | Transcription factor MYC2 |
| 5gnj_I | 1e-12 | 175 | 253 | 5 | 83 | Transcription factor MYC2 |
| 5gnj_M | 1e-12 | 175 | 253 | 5 | 83 | Transcription factor MYC2 |
| 5gnj_N | 1e-12 | 175 | 253 | 5 | 83 | Transcription factor MYC2 |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 165 | 187 | KKKSKKLEGQPSKNLMAERRRRK |
| 2 | 182 | 189 | ERRRRKRL |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY085134 | 0.0 | AY085134.1 Arabidopsis thaliana clone 13267 mRNA, complete sequence. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Sharma N, et al.
NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
Development, 2016. 143(4): p. 682-90
[PMID:26758694] - Chen YS, et al.
Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
Plant Mol. Biol., 2017. 93(3): p. 299-311
[PMID:27866313] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470]
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