PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0635s0013.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 400aa    MW: 43838.4 Da    PI: 9.7425
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0635s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-0587109123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k F r  nL+ H r H
  Cagra.0635s0013.1.p  87 FVCEICNKGFQRDQNLQLHRRGH 109
                          89*******************88 PP
2zf-C2H212.90.00034164186123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H + +
  Cagra.0635s0013.1.p 164 WKCEKCSKFYAVQSDWKAHTKIC 186
                          58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-586109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.65E-686109No hitNo description
PfamPF121716.1E-587109IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94987109IPR007087Zinc finger, C2H2
SMARTSM003550.01787109IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
SuperFamilySSF576673.65E-6159184No hitNo description
SMARTSM00355180164184IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MANMFLSHSL SYKLSSLSTE ASASSGNTLI SSTIQDFSGF NHAISSLSTH TETHKITKKR  60
RGLPGNPDPD AEVIALSPKT LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQKSS  120
KEQQRKKVYV CPETSCAHHH PSRALGDLTG IKKHFCRKHG EKKWKCEKCS KFYAVQSDWK  180
AHTKICGTRE YRCDCGTLFS RKDSFITHRA FCDALAEESA RIHSTSSSSI LTNPNPNHFM  240
INKSSPLFFT SPLCVEPSHS AAALSSTAAL SATALLQKAT ALSSSAFGGG GQTRSIGHHR  300
HHLTKNANEL LGGVDRVMMT SSEYDQLAST WQKADRLTRD FLGLTGHGVH VSMRPGGVLG  360
YSGGVAFPMS AYDTESHHNH ESSSFQKAYD LGFSGAHSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35160229372Zinc finger protein JACKDAW
5b3h_F1e-35160229372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113126KLKQKSSKEQQRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0635s0013.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936720.0AB493672.1 Arabidopsis thaliana At4g02670 mRNA for hypothetical protein, partial cds, clone: RAAt4g02670.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287797.20.0protein indeterminate-domain 12
SwissprotO227590.0IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLR0H7560.0R0H756_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.0635s0013.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.10.0indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]