PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0578s0027.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bHLH | ||||||||
Protein Properties | Length: 258aa MW: 29139.7 Da PI: 6.7948 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.7 | 3.2e-16 | 75 | 127 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR++iNs f++Lr++lP + +skKls e++ + +YI +Lq Cagra.0578s0027.1.p 75 KKLNHNASERDRRKKINSLFSTLRSCLPAsN---HSKKLSIPETVSRSLKYIPELQ 127 6789*************************55...9999***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.608 | 74 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-17 | 75 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.46E-15 | 75 | 131 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.1E-15 | 75 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-13 | 75 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-12 | 80 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MCALVPSPLF QNFGWPSTGQ YESYYGAGDN INNGPFLDFP VPQTYGVTHH HQNSLQGVSV 60 SSEGNEIDNN QVVVKKLNHN ASERDRRKKI NSLFSTLRSC LPASNHSKKL SIPETVSRSL 120 KYIPELQQQV KNLIQKKEEL LVRVSGQRDF KHYDKQQQKA VASYLSTVSA TRLGESEVMV 180 QISSSKIHNF SISNVLSGLE EDGFALVDIS SSGSHGERLF YTLHLQMEDM DDYYKTNCEE 240 LSERMLYLYE KYEKSLA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0578s0027.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by OBP3, auxin and salicylic acid (SA). Repressed by jasmonic acid (JA), UV LIGHT, and heat treatments. Up regulated by iron deficiency in roots and leaves, as well as by nickel, high zinc or high copper treatments. Repressed by high iron, low copper and low zinc treatments. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:12887587, ECO:0000269|PubMed:17516080}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006292870.1 | 0.0 | transcription factor ORG2 | ||||
Swissprot | Q9M1K1 | 1e-154 | ORG2_ARATH; Transcription factor ORG2 | ||||
TrEMBL | R0HP72 | 0.0 | R0HP72_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0578s0027.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM482 | 28 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 1e-156 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0578s0027.1.p |