PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0434s0049.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | HSF | ||||||||
Protein Properties | Length: 479aa MW: 53057.7 Da PI: 4.5705 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.7 | 1.2e-35 | 26 | 118 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k+y++++d++++e++sws+ +nsfvv+ ef+k +LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k Cagra.0434s0049.1.p 26 FLSKTYDMVDDPSTNEVVSWSSGNNSFVVWSVPEFSKVLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQK 106 9****************************************************************999.........************* PP XXXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkkse 103 +ll+ i r+ks+ Cagra.0434s0049.1.p 107 QLLKGIVRRKSS 118 *********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.8E-38 | 21 | 109 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.18E-34 | 21 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.9E-58 | 22 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.2E-30 | 26 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.5E-20 | 26 | 49 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.5E-20 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 65 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.5E-20 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MEPVPESVPS ANSPSIPPPV NSVPPFLSKT YDMVDDPSTN EVVSWSSGNN SFVVWSVPEF 60 SKVLLPKYFK HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG FLRGQKQLLK GIVRRKSSHV 120 QQNQQQTQVR NSSAGACVEV GKFGLEEEVE RLKRDKNVLM QELVRLRQQQ QVTENQLQNV 180 GQKVQVMEQR QQQMMSFLAK AVQSPGFLNQ LVQQNNDGSR QIPGSNKKRR LSGDEQENCG 240 SHGADGLNRQ IVKYQPSINE AAQNMLRQFL NTSTTPQYEP VSNNSDSFLL GDVPSSNSVD 300 NGNPSNRVTL AEVSPNTSHS VTNQVPEVNL AHHPQAGLVQ PILSSSPAQG VAPTASWSPE 360 SDLVGCETGN GECFDPIMAA LDVFESEAIS PEGEGKMNEL LDGVSKLPGV QDPFWEQFFD 420 DGSQAIGDTD EILSGSVENN DLVMEQEQPT TNEWTRNQQQ MNYLTEQMGL LSSEAQRK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-25 | 21 | 118 | 15 | 123 | Heat shock factor protein 1 |
5d5u_B | 1e-25 | 9 | 115 | 18 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-25 | 9 | 115 | 18 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-25 | 9 | 115 | 18 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00514 | DAP | Transfer from AT5G16820 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0434s0049.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | Y14068 | 0.0 | Y14068.1 Arabidopsis thaliana mRNA for heat shock factor 3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006289698.1 | 0.0 | heat stress transcription factor A-1b isoform X1 | ||||
Swissprot | O81821 | 0.0 | HFA1B_ARATH; Heat stress transcription factor A-1b | ||||
TrEMBL | R0FKX1 | 0.0 | R0FKX1_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0434s0049.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2236 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 0.0 | heat shock factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0434s0049.1.p |
Publications ? help Back to Top | |||
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