PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cagra.0410s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 233aa MW: 26534.4 Da PI: 6.5181 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.8 | 1.5e-11 | 121 | 214 | 2 | 80 |
EEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTH.HHHHHHHT- CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliy.rkksgryvltkGW.keFvkangL 74 +k+l++sdv+ + rl +pk+ a+eh +g +++ ++tl d+ ++s + + +++ g+yvl+++W k+Fv+++gL Cagra.0410s0005.1.p 121 KKTLSKSDVGIQTRLLIPKESANEHilkylteeeiklvedEG--NRGLKITLFDTANKSTNQLCLKrWNSAGSYVLKSNWnKDFVEEKGL 208 699**********************88777666666653322..25556666666655555444334*************557******* PP -TT-EE CS B3 75 kegDfv 80 ++g + Cagra.0410s0005.1.p 209 EAGKQI 214 **9865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.86E-14 | 116 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.66E-16 | 118 | 231 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-14 | 120 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.6E-8 | 122 | 214 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence Send to blast |
MLLFPCHVEE LAEMVPCGGR SEGEVMNTED YDSPSSFPKR PRLLDLFPCQ SVALDLFPCR 60 SVVLDLFPCQ SGDFARVVPS AARNERRVVS LAHFRNMPRE ERDNVSTELT LSIEGDIWKI 120 KKTLSKSDVG IQTRLLIPKE SANEHILKYL TEEEIKLVED EGNRGLKITL FDTANKSTNQ 180 LCLKRWNSAG SYVLKSNWNK DFVEEKGLEA GKQIELFWNP YASRLHFRVL KN* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Cagra.0410s0005.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010468027.1 | 1e-106 | PREDICTED: putative B3 domain-containing protein At1g78640 | ||||
TrEMBL | R0I8N3 | 1e-146 | R0I8N3_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0410s0005.1.p | 1e-172 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM456 | 9 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33720.1 | 2e-26 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cagra.0410s0005.1.p |