PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0380s0028.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 313aa    MW: 32907.7 Da    PI: 6.845
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0380s0028.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11142187555
                          HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR+ri +++  L+el+P+ +      K +Ka++L + ++Y+k Lq
  Cagra.0380s0028.1.p 142 HSIAERLRRERIAERMKSLQELVPNgN------KTDKASMLDEIIDYVKFLQ 187
                          99***********************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-17135196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.40E-13135191No hitNo description
PROSITE profilePS5088817.301137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-16139196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-9142187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-14143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MNSSSLLTPS SSSSPHLQSP ATFDHDDFLH HIFSSTPWPS SVLDEAPPPT PDCAGAIPGF  60
HHHDVDSRNQ ITMIPLSHNH PNDALFNGFS AGSLPFHLPQ GSGGQAQTQS QATASTTTGG  120
TTAPTQTKPK VRARRGQATD PHSIAERLRR ERIAERMKSL QELVPNGNKT DKASMLDEII  180
DYVKFLQLQV KVLSMSRLGG AASVSSQISE DAGGSHENTS SSGENQTTAA AKMTEHQVAK  240
LMEEDMGSAM QYLQGKGLCL MPISLATTIS TATCASSRGL PLSPNLSTTT TIANGNGSSL  300
VAVKDAPTVS KP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146151RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00462DAPTransfer from AT4G30980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0380s0028.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937110.0AB493711.1 Arabidopsis thaliana At4g30980 mRNA for hypothetical protein, partial cds, clone: RAAt4g30980.
GenBankAF4886010.0AF488601.1 Arabidopsis thaliana clone bHLH069 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023634910.10.0transcription factor bHLH69
SwissprotQ8S3D50.0BH069_ARATH; Transcription factor bHLH69
TrEMBLR0H0Q90.0R0H0Q9_9BRAS; Uncharacterized protein
STRINGXP_006284115.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-144LJRHL1-like 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]