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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.0316s0082.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
bHLH |
Protein Properties |
Length: 275aa MW: 30782.5 Da PI: 8.0766 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.0316s0082.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 26.3 | 1.3e-08 | 4 | 46 | 8 | 54 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
rE+ RR+++N+ f eL +l + +K++Ka+iL+ +v+ +k+L
Cagra.0316s0082.1.p 4 REKLRREKLNEHFVELGNVLDPE----RPKNDKATILTDTVQLLKEL 46
8******************9987....69***************998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 275 aa
Download sequence Send
to blast |
KAGREKLRRE KLNEHFVELG NVLDPERPKN DKATILTDTV QLLKELTSEV NKLKSEYTAL 60 TDESRELTQE KNDLREEKTA LKSDIENLNL QYQQRLRSMS PWGAAMDHTV MMAPPPSFPY 120 PMPMAMPPGS IPMHPSMPSY TYFGNQNPSM IPAPCPTYMP YMPPNTVVEQ QSVHIPQNPG 180 NRSREPRAKV SRESRSEKAE DSNEVATQLE LKTPGSTSDK DTLQRPEKTK RCKRNNNNSI 240 EESSHSSKCS SSPSIRDHSS SSSVAGGQKP DDSK*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK317507 | 0.0 | AK317507.1 Arabidopsis thaliana AT3G19860 mRNA, complete cds, clone: RAFL25-09-J11. |
GenBank | AY065107 | 0.0 | AY065107.1 Arabidopsis thaliana unknown protein (At3g19860; MPN9.10) mRNA, complete cds. |
GenBank | AY081703 | 0.0 | AY081703.1 Arabidopsis thaliana unknown protein (At3g19860) mRNA, complete cds. |