PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0288s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 496aa    MW: 56326.4 Da    PI: 6.948
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0288s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.73e-21141196156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          r+k +++t++q++ +e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Cagra.0288s0001.1.p 141 RKKYHRHTTDQIRHMEALFKETPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 196
                          7999************************************************9877 PP
2START193.11.3e-602984951176
                          HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS
                START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla... 77 
                          e+a++a+ el+k+a+++ep+W +s+    e++n+de+l++f+++++      +++ea+r++g+v+m++++l ++++d++ qW+e++a   
  Cagra.0288s0001.1.p 298 EVANRATLELQKMATSAEPLWLRSVetgrEILNYDEYLKEFPQAQAssfpgrKTIEASRDVGIVFMDAHKLAQSFMDVG-QWKEMFAcli 386
                          68899**************************************999*********************************.********** PP

                          .EEEEEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEE CS
                START  78 .kaetlevissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepk 157
                           ka+t++vi++g       ga+qlm+ e+q+l+p+vp R+++fvR++rql+ ++w++vdvSv++e++++e ++s+ ++++lpSg++ie++
  Cagra.0288s0001.1.p 387 sKAATVDVIRQGegpsridGAIQLMFGEMQLLTPVVPtREVYFVRSCRQLSPEKWAVVDVSVSVEDNNTEkEASLLKCRKLPSGCIIEDT 476
                          ****************************************************************************************** PP

                          CTCEEEEEEEE-EE--SSX CS
                START 158 snghskvtwvehvdlkgrl 176
                          snghskvtwveh d+++++
  Cagra.0288s0001.1.p 477 SNGHSKVTWVEHLDVSAST 495
                          ***************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-23126192IPR009057Homeodomain-like
SuperFamilySSF466893.34E-20133199IPR009057Homeodomain-like
PROSITE profilePS5007117.815138198IPR001356Homeobox domain
SMARTSM003899.6E-18140202IPR001356Homeobox domain
CDDcd000861.34E-16141196No hitNo description
PfamPF000461.5E-18141196IPR001356Homeobox domain
PRINTSPR000319.8E-5169178IPR000047Helix-turn-helix motif
PROSITE patternPS000270173196IPR017970Homeobox, conserved site
PRINTSPR000319.8E-5178194IPR000047Helix-turn-helix motif
PROSITE profilePS5084832.959289496IPR002913START domain
SuperFamilySSF559611.51E-25292493No hitNo description
CDDcd088753.52E-85293496No hitNo description
SMARTSM002343.9E-56298496IPR002913START domain
PfamPF018527.2E-55298496IPR002913START domain
Gene3DG3DSA:3.30.530.202.6E-5339493IPR023393START-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
LHYINVWDKN EIKDLNKGKR ERRDIYIKGR RSGERKAKKG FGFCMSMAVE MSSKQQPTKD  60
FFSSPALSLS LAGIFRNASS GSTNPEEDFL SRKVVDDEDR TVEMSSENSG PTRSRSEEDL  120
DGEDHEEDEE EDGSKGNKRK RKKYHRHTTD QIRHMEALFK ETPHPDEKQR QQLSKQLGLA  180
PRQVKFWFQN RRTQIKAIQE RHENSLLKAE LEKLREENKA MRESFSKANS SCPNCGGGPD  240
DLHLENSKLK AELDKLRAAL GRTPYPLQAS CSEDQEHRLG SLDFYTGVFA LEKSRIAEVA  300
NRATLELQKM ATSAEPLWLR SVETGREILN YDEYLKEFPQ AQASSFPGRK TIEASRDVGI  360
VFMDAHKLAQ SFMDVGQWKE MFACLISKAA TVDVIRQGEG PSRIDGAIQL MFGEMQLLTP  420
VVPTREVYFV RSCRQLSPEK WAVVDVSVSV EDNNTEKEAS LLKCRKLPSG CIIEDTSNGH  480
SKVTWVEHLD VSASTV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138142RKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0288s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3602940.0AF360294.1 Arabidopsis thaliana putative homeobox protein GLABRA2 (At1g79840) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023642973.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLR0GGD10.0R0GGD1_9BRAS; Uncharacterized protein
STRINGCagra.0288s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123702731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]