PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0050s0071.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 379aa    MW: 40610.1 Da    PI: 9.7868
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0050s0071.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.65.6e-23253314162
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                          e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN+aL++el++l+++++kl+  
  Cagra.0050s0071.1.p 253 ERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKSDKLRGA 314
                          89*******************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.8E-30194IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.4E-15127232No hitNo description
Gene3DG3DSA:1.20.5.1703.9E-19247313No hitNo description
SMARTSM003381.2E-21253317IPR004827Basic-leucine zipper domain
PfamPF001702.4E-21253315IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.403255318IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.75E-11256312No hitNo description
CDDcd147023.71E-23258309No hitNo description
PROSITE patternPS000360260275IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGNSEEPKPT KSGNKPSSPP DQTNVHVYPD WAAMQAYYGP RVAMPPYYNS AMAASGHPPP  60
PYMWNPQHMM SPYGAPYGAV YPHGGGVYAH PGIPMGSQPQ GQKAPPLTTP GTHLSIDTPT  120
KSTGNTDNGL MKKLKEFDGL AMSLGNGNPE IGADEHKRNS SETDGSSDGS DGNTTGADEP  180
KLKRSREVTP TKDGKQLVQS SSFRSVSPSS GDTGVKVVQG AGAIISPGVS ANSNPFMSQS  240
LAMVPPETWL QNERELKRER RKQSNRESAR RSRLRKQAET EELARKVEAL TAENMALRSE  300
LNQLNEKSDK LRGANATLLD KLKCSEPEKS VPGNLLSRYK NSGAGDKNKN QGDNDSNSTS  360
KLRQLLDTKP RANAVAAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269275RRSRLRK
2269276RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0050s0071.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3703070.0AF370307.1 Arabidopsis thaliana putative G-box binding bZIP transcription factor (At2g46270) mRNA, complete cds.
GenBankAY0630930.0AY063093.1 Arabidopsis thaliana putative G-box binding bZIP transcription factor (At2g46270) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294418.10.0G-box-binding factor 3 isoform X1
SwissprotP427760.0GBF3_ARATH; G-box-binding factor 3
TrEMBLR0FX800.0R0FX80_9BRAS; Uncharacterized protein
STRINGCagra.0050s0071.1.p0.0(Capsella grandiflora)
STRINGXP_006294418.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.10.0G-box binding factor 3
Publications ? help Back to Top
  1. Obayashi T, et al.
    ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis.
    Nucleic Acids Res., 2007. 35(Database issue): p. D863-9
    [PMID:17130150]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  3. Ramegowda V, et al.
    GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana.
    Sci Rep, 2017. 7(1): p. 9148
    [PMID:28831141]