PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG033652.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NF-YC | ||||||||
Protein Properties | Length: 211aa MW: 23829.9 Da PI: 10.115 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 36.4 | 1.1e-11 | 111 | 193 | 17 | 99 |
NF-YC 17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +P+arik+i+ +++ + + ++ l+ ka e f+ +++ ++ + + ++++l ++++v++ fdfl d vp++ CCG033652.1 111 TACWFPMARIKRIINSEDTESLLNQDVVFLVNKATEKFLEQFSDEAYDYTVQDRKKSLAYKHLSTVVSKRRRFDFLSDFVPEK 193 55679***************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 6.46E-16 | 95 | 193 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.2E-16 | 114 | 177 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 6.0E-22 | 115 | 192 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MKRVAKSKRE MKKKKSSSKE VVVITKSKQE NKKSKSKTSN ISPREPVVLL LSSSSSSSDS 60 QEIIEIEGED DETKSGIKNR SMKSSKIKSA NNAKRKGKDD DFDGEGDEDG TACWFPMARI 120 KRIINSEDTE SLLNQDVVFL VNKATEKFLE QFSDEAYDYT VQDRKKSLAY KHLSTVVSKR 180 RRFDFLSDFV PEKLNAKDAL ADRKLAMTGQ G |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 163 | 181 | RKKSLAYKHLSTVVSKRRR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU225776 | 4e-60 | CU225776.1 Populus EST from leave. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011044380.1 | 1e-150 | PREDICTED: DNA polymerase epsilon subunit C | ||||
TrEMBL | B9HQA8 | 1e-114 | B9HQA8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s01750.1 | 1e-115 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12016 | 30 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 2e-32 | nuclear factor Y, subunit C10 |