PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG033155.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 319aa    MW: 34951.9 Da    PI: 7.0482
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG033155.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017130152123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+++F++   L  H  +H
  CCG033155.1 130 YECKTCNRCFPSFQALGGHRASH 152
                  99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.4E-11129154IPR007087Zinc finger, C2H2
SuperFamilySSF576671.9E-8130152No hitNo description
PROSITE profilePS5015710.367130157IPR007087Zinc finger, C2H2
SMARTSM003550.14130152IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
SuperFamilySSF576671.9E-8211238No hitNo description
PfamPF139121.5E-11216240IPR007087Zinc finger, C2H2
PROSITE profilePS501579.66216243IPR007087Zinc finger, C2H2
SMARTSM003550.058216238IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280218238IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MMDMEAQDEF MGSNDLTQIV KGKRTKRQRS SSPYKVVTSC SSSGYGGGGG ERGVLIEEYG  60
SISSPTTSSE VCESTEEEED MANCLILLAQ GDVPPKQIHE NKGTKFEKFS ARKFSDMSVP  120
TINKAGFFAY ECKTCNRCFP SFQALGGHRA SHKKPKATAL EEKKGLVVAS MEDLDDRQLN  180
KRSPYPSLSL QIPHTTTTTN NNNVNKGFQA NKAKIHECSI CGSEFMSGQA LGGHMRRHRA  240
NTGANQVNNI STDSSSATTE SNIHGDHHHT IKPGNILALD LNLPAPPEDD HHLHESKFQF  300
SPTQQQVVFS SPALVDCHY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011983.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLB9HQP70.0B9HQP7_POPTR; C2H2 family protein
STRINGPOPTR_0009s01020.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.16e-54C2H2 family protein