PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG032214.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 465aa MW: 51816 Da PI: 7.3705

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG032214.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.8	3.3e-12	299	341	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR ri+++++ Lr l+Pk + K++Ka+iL A++YI +L CCG032214.1 299 VTERNRRTRIKTGLFALRALVPKiS------KMDKAAILGDAIDYIGEL 341 67*******************66......*************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	4.3E-19	9	163	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	6.01E-11	290	346	No hit	No description
SuperFamily	SSF47459	1.83E-15	291	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.818	292	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.9E-15	294	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-12	298	347	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.8E-10	299	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MRGLNRAMER LRPLVDSNAW DYCVVWKLGD DPSRFIEWVG CCCGGCGGGG GFNVERDRGE 60 DNLFGRGPLC KDVFFKHPVR TKACEALSRF PSSMPLYSGI HGEVVISAEP RWLCHATVTT 120 HDSNTLREVA GTQVLIPVIG GLVELFAAKH MKKDEKMIES LRAHCHVPVK QEAVTDHGYS 180 NSSFNDHHLD SLLEDNLPHS CHLLSLIPQT QFLLPLTQPR NCISFEGSSS GSNPSNEAPS 240 FVSNASQLPQ HGHLELSVGK SNHDENILKQ RAGSADCNKK VPKVMRKPER DDYKSKNLVT 300 ERNRRTRIKT GLFALRALVP KISKMDKAAI LGDAIDYIGE LLKEVKNLQD EIKNAEEEEC 360 RASNIELKTS KLEIFQEDHV SSSKINQDSS GFVEKKGAEV QLEVDQINKR QFLLKFLCGQ 420 RQGGFGRLME AIHSLGLQIL DANITTFNGS VLNILKVEVR YNTES

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MRGLNRAMER LRPLVDSNAW DYCVVWKLGD DPSRFIEWVG CCCGGCGGGG GFNVERDRGE  60
DNLFGRGPLC KDVFFKHPVR TKACEALSRF PSSMPLYSGI HGEVVISAEP RWLCHATVTT  120
HDSNTLREVA GTQVLIPVIG GLVELFAAKH MKKDEKMIES LRAHCHVPVK QEAVTDHGYS  180
NSSFNDHHLD SLLEDNLPHS CHLLSLIPQT QFLLPLTQPR NCISFEGSSS GSNPSNEAPS  240
FVSNASQLPQ HGHLELSVGK SNHDENILKQ RAGSADCNKK VPKVMRKPER DDYKSKNLVT  300
ERNRRTRIKT GLFALRALVP KISKMDKAAI LGDAIDYIGE LLKEVKNLQD EIKNAEEEEC  360
RASNIELKTS KLEIFQEDHV SSSKINQDSS GFVEKKGAEV QLEVDQINKR QFLLKFLCGQ  420
RQGGFGRLME AIHSLGLQIL DANITTFNGS VLNILKVEVR YNTES

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011034128.1	0.0	PREDICTED: transcription factor bHLH90 isoform X2
TrEMBL	A0A3N7FFE6	0.0	A0A3N7FFE6_POPTR; Uncharacterized protein
STRING	POPTR_0008s19390.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12265	30	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10610.1	4e-42	bHLH family protein