PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG032006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Whirly | ||||||||
Protein Properties | Length: 259aa MW: 28366.5 Da PI: 9.9813 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 199.3 | 5e-62 | 83 | 219 | 1 | 137 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkveP 98 sv+k+kaal+v++v+ptf++ sgnl+++r+G+++l++ +a++erkyd+ek+q+falsatev++l++ ++k+sceffhdp++ +sn+G+vrk l+++P CCG032006.1 83 SVFKGKAALSVEPVLPTFSKFGSGNLRVDRRGSMMLTFLPAIGERKYDYEKRQKFALSATEVGSLISTGPKDSCEFFHDPSMLSSNAGQVRKNLSIKP 180 79************************************************************************************************ PP Whirly 99 lpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 ++dGsG+fv+lsv n+++k+ e+f+vPv+ aef+vl+++ CCG032006.1 181 HADGSGYFVSLSVVNNILKTTERFTVPVTTAEFTVLKTA 219 ************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 3.2E-74 | 71 | 235 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 5.57E-65 | 76 | 257 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 6.3E-59 | 84 | 218 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MMKLSRFLNS NRNAVGKPTD VRDGSALHAL TFQAGISTGG KSSIQGTEAS IQWFPRSLAS 60 LDTMSCYATK TEKYADRVFA PYSVFKGKAA LSVEPVLPTF SKFGSGNLRV DRRGSMMLTF 120 LPAIGERKYD YEKRQKFALS ATEVGSLIST GPKDSCEFFH DPSMLSSNAG QVRKNLSIKP 180 HADGSGYFVS LSVVNNILKT TERFTVPVTT AEFTVLKTAC SFALPHIMGW DRLTTPLPGT 240 LASKLSKVDP QMPDLEWDK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4kop_A | 7e-92 | 73 | 237 | 6 | 170 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_B | 7e-92 | 73 | 237 | 6 | 170 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_C | 7e-92 | 73 | 237 | 6 | 170 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_D | 7e-92 | 73 | 237 | 6 | 170 | Single-stranded DNA-binding protein WHY2, mitochondrial |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF146025 | 0.0 | EF146025.1 Populus trichocarpa clone WS0115_A07 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011011443.1 | 1e-163 | PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial | ||||
Swissprot | Q8VYF7 | 6e-95 | WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A9PCM9 | 1e-160 | A9PCM9_POPTR; Whirly family protein | ||||
STRING | cassava4.1_015441m | 1e-111 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11383 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 2e-97 | WHIRLY 2 |