PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031662.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 244aa    MW: 27337.2 Da    PI: 10.3325
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031662.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF694.5e-221662349
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 i n+sn  vtfskRr g++KKA+EL++LC+aev++i+fs+  k++ +
  CCG031662.1 16 IPNESNLMVTFSKRRSGLFKKASELCTLCGAEVSIIVFSPGKKVFSF 62
                 889*************************************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.507666IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-29665IPR002100Transcription factor, MADS-box
CDDcd002653.91E-33774No hitNo description
SuperFamilySSF554551.31E-26778IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-17828IPR002100Transcription factor, MADS-box
PfamPF003195.0E-241562IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-172843IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-174364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MVRKSKGRQK LEMVKIPNES NLMVTFSKRR SGLFKKASEL CTLCGAEVSI IVFSPGKKVF  60
SFGHPSVEKV MERYVSGNIP QTSGAFHLIE AHRNARVHEL NMQLTQVANQ LEVEKKRGEE  120
LDRMRKASQS RNWWENPIQE LDLAQLEQLK ASLQDLKQDV TRHAKQILIQ NSAPQPFIAA  180
NPSTSGNHLF DTRNTGFISN MAVPPFNTNM SGTPFNTNMT ASPFNANSAM PPFGYSLGYG  240
TSFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A6e-16783177Myocyte-specific enhancer factor 2A
3kov_B6e-16783177Myocyte-specific enhancer factor 2A
3kov_I6e-16783177Myocyte-specific enhancer factor 2A
3kov_J6e-16783177Myocyte-specific enhancer factor 2A
3p57_A6e-16783177Myocyte-specific enhancer factor 2A
3p57_B6e-16783177Myocyte-specific enhancer factor 2A
3p57_C6e-16783177Myocyte-specific enhancer factor 2A
3p57_D6e-16783177Myocyte-specific enhancer factor 2A
3p57_I6e-16783177Myocyte-specific enhancer factor 2A
3p57_J6e-16783177Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043074.10.0PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK21e-67AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLB9IJA61e-178B9IJA6_POPTR; Uncharacterized protein
STRINGPOPTR_0017s07460.11e-179(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-70AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]