PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031514.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SBP
Protein Properties Length: 491aa    MW: 54381.2 Da    PI: 8.6205
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031514.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.13.3e-40186261176
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                  +CqvegC+ dls+ak+yhr+h+vCe hsk+++v+v+gle+rfCqqCsrfh lsefDe+k+sCrrrL++hn+rrrk+
  CCG031514.1 186 RCQVEGCNLDLSSAKDYHRKHRVCESHSKCSKVIVAGLERRFCQQCSRFHGLSEFDEKKKSCRRRLSDHNARRRKQ 261
                  6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.8E-32180248IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.513184261IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.11E-37185265IPR004333Transcription factor, SBP-box
PfamPF031104.9E-30187260IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MSSVSLMEWN GKPHLQWDWE NLIMFNAITN ENSKQLSLAD LETDGEKGND SGFFYSSGSV  60
SRSRGSISDL ELASFSKSSK SASTNSSSAG EVKTSKFTLE ASKTNPSDYN KEELVKAKAT  120
DTSPTLEASV GSGDQLLGLK LGKRTYFEDA CAGSNAQSSS ISTIPVPSFT PAKKLKSSNH  180
TQRAPRCQVE GCNLDLSSAK DYHRKHRVCE SHSKCSKVIV AGLERRFCQQ CSRFHGLSEF  240
DEKKKSCRRR LSDHNARRRK QPGSVHLNPS RLSSSLYGID ERQQMSHVWD KAPLVHSRPN  300
ANLTWESTST SKFTITKEYV AKPAEIGGSD RRLHFSGIDL TNSIAIQHHH KSNGFLPSKA  360
KGTAGEVLNQ GLDYSLIPSK AEATPEFHRA TPEFHRALSL LSTDSWGSCE PQSISFEQPM  420
HANHTSMHQS VLHAVPQSSP LASSEYWRTE QQSNDPQVHT LSSRTDGSNY LQEFQLLRTS  480
NGNDFYSSHM N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-271872601184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242259KKKSCRRRLSDHNARRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020735.10.0PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
TrEMBLA0A3N7EUC70.0A0A3N7EUC7_POPTR; Uncharacterized protein
STRINGPOPTR_0003s17120.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.35e-73squamosa promoter binding protein-like 2