PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG031351.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 463aa MW: 52915.9 Da PI: 9.5385

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG031351.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	73	94	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++C++ Fs++ L H++ H CCG031351.1 73 SCTYCKREFSTSQALGGHQNAH 94 7******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.7E-5	69	99	No hit	No description
PROSITE profile	PS50157	10.907	72	99	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	74	94	IPR007087	Zinc finger, C2H2
SuperFamily	SSF101936	1.51E-15	340	455	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.95E-15	342	457	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.1E-17	344	456	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	3.3E-5	344	459	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MINLKMKEKV VNKIEPSTLL DSSSSPVLLD LKLSNDDSFG GSKLEFNLFS LINADANEST 60 DETLKPANSR VLSCTYCKRE FSTSQALGGH QNAHKQERAI AKRRQVMDVD AFAQFLYYPY 120 PNHSTHPYYG YFNKSLGKEM DSLICKPSSY PWNASSSGYH FGLGGWSRQA MMNAQPTSID 180 RLRMESLNSL NVLSLLTAME RQQLFHVSNS CSIFKKIKNP NKRKECECQQ AERELFAGSQ 240 PLFNEHPSWF KKPKTTSGIG SIVAASRNPG RVLNEPKLFD ENRVFKNSVD SDSRNKESAE 300 ELERRVAFNL RTMRSSFSLG DLLEERSRGV STQLSLYHHD PFEIKKKMKP SDLGNLCRLL 360 VSADLVEKYI LPFLNEDQTK QVKIPNQERN GLKVWVRDID TGSMHQLVFK RWSTSKSYIF 420 NDGWTKHFVK RRNLFEGDEI GLYWDNDQSR LHFSVLSRAA ATG

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MINLKMKEKV VNKIEPSTLL DSSSSPVLLD LKLSNDDSFG GSKLEFNLFS LINADANEST  60
DETLKPANSR VLSCTYCKRE FSTSQALGGH QNAHKQERAI AKRRQVMDVD AFAQFLYYPY  120
PNHSTHPYYG YFNKSLGKEM DSLICKPSSY PWNASSSGYH FGLGGWSRQA MMNAQPTSID  180
RLRMESLNSL NVLSLLTAME RQQLFHVSNS CSIFKKIKNP NKRKECECQQ AERELFAGSQ  240
PLFNEHPSWF KKPKTTSGIG SIVAASRNPG RVLNEPKLFD ENRVFKNSVD SDSRNKESAE  300
ELERRVAFNL RTMRSSFSLG DLLEERSRGV STQLSLYHHD PFEIKKKMKP SDLGNLCRLL  360
VSADLVEKYI LPFLNEDQTK QVKIPNQERN GLKVWVRDID TGSMHQLVFK RWSTSKSYIF  420
NDGWTKHFVK RRNLFEGDEI GLYWDNDQSR LHFSVLSRAA ATG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011020969.1	0.0	PREDICTED: uncharacterized protein LOC105123155
TrEMBL	A0A3N7EUQ2	0.0	A0A3N7EUQ2_POPTR; Uncharacterized protein
STRING	POPTR_0003s19110.1	1e-169	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1822	30	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33720.1	1e-30	B3 family protein