PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031268.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRF
Protein Properties Length: 553aa    MW: 62697.2 Da    PI: 8.1959
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031268.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.99.6e-2576119144
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                  d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e
  CCG031268.1  76 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 119
                  79***************************************997 PP
2QLQ57.73.7e-201144336
          QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                 FTa+Q+q+L++Q+l+yKy++++ P+Pp+Ll+ i+
  CCG031268.1 11 FTASQWQELEHQALIYKYMVSGIPIPPDLLFTIK 44
                 ******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.8E-11945IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.0221045IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.6E-151143IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.9876120IPR014977WRC domain
PfamPF088792.2E-2077119IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MIMSGGNRFL FTASQWQELE HQALIYKYMV SGIPIPPDLL FTIKRSVCLD SSNLFPRQHP  60
HFAWSCFQMG LGRKTDPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG KNRSRKPVEV  120
ATQTQSTSPP TVSSITRNHS NNSLLTTSSH SLSLLMSPET QHRNHLHYPA GYHAHPNHQF  180
LSSSTSTGIG LLPQENSTHL LLDSGGSSMT NADFRNRRSF YGLKEEVDEH AFFSEPSGSM  240
RSLPGSSLDD AWQLTPLTIN SSSSSSSSTN SSKQRSLSSL DNEYSYLQLQ SLCDHDIPKH  300
QKQHQHNYLL GNDISNLGPI KMEKEEPQKT VHRFFDEWPP KKKQSWLYFG DKSSNSASVS  360
TTRLSISIPS SHDFLPSFNS RSNNVIVEGP DAWPQDLLIC HLSTHQGTLL VVIKLTQHTI  420
TSKMGNALYI VEEDNYQMGT CISQSSLKMV AYELILTNYM EKKNRAFRMQ HTSAISPAHG  480
ALEFDEHASE KAEQYKLSEQ KWEGRYEVSP WCLAFAGHFV PSYLDELQVG YNAMRGGMFQ  540
SWRKEPASHG EVR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826620.0AC182662.2 Populus trichocarpa clone Pop1-15O24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011009586.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLA0A2K1WWV80.0A0A2K1WWV8_POPTR; Uncharacterized protein
STRINGPOPTR_0018s07140.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-51growth-regulating factor 5