PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG031118.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NF-YB | ||||||||
Protein Properties | Length: 256aa MW: 28464.9 Da PI: 6.7936 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 176.5 | 2.7e-55 | 27 | 121 | 3 | 97 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 eqdr+lPianvsrimkk lPanakisk+aketvqecvsefisf+t+eas+kcqrekrktingddllwa++tlGfe+yv plkvyl++yr++egek CCG031118.1 27 EQDRLLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASEKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLNRYRDTEGEK 121 8*******************************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 8.5E-53 | 22 | 139 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.71E-40 | 28 | 141 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.5E-27 | 31 | 95 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 5.5E-19 | 59 | 77 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 62 | 78 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 5.5E-19 | 78 | 96 | No hit | No description |
PRINTS | PR00615 | 5.5E-19 | 97 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MTGKRTRISP IGSPLSENIS ESSSKLEQDR LLPIANVSRI MKKSLPANAK ISKEAKETVQ 60 ECVSEFISFI TGEASEKCQR EKRKTINGDD LLWAMTTLGF ENYVGPLKVY LNRYRDTEGE 120 KNSMARQEDQ LSPTNHGSLG THETIKVNGS SSLSTGMDLQ SSNAGHYSLG TEVTARSYGQ 180 NTRFFGFQES SMVGDFNMNT IRDHGDRNGN IAMAACEIKT AVVYLLNTPN MKHQPMSEAE 240 DQDIMILQSQ VNHSKW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 2e-46 | 27 | 116 | 3 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 2e-46 | 27 | 116 | 3 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ161880 | 0.0 | HQ161880.1 Populus euphratica nuclear transcription factor Y-alpha (NFYA) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011025616.1 | 1e-158 | PREDICTED: nuclear transcription factor Y subunit B-1-like | ||||
TrEMBL | A0A2K1ZR67 | 1e-145 | A0A2K1ZR67_POPTR; Uncharacterized protein | ||||
TrEMBL | F8RS74 | 1e-146 | F8RS74_POPEU; Nuclear transcription factor Y-alpha (Fragment) | ||||
STRING | POPTR_0007s06480.1 | 1e-130 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF591 | 34 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 7e-61 | nuclear factor Y, subunit B3 |