PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030752.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 486aa    MW: 53651.9 Da    PI: 5.6696
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030752.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.71e-16141187148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd  l+++vkq+G + W+ Ia+++  gR +kqc++rw+++l
      CCG030752.1 141 KGQWTEEEDRNLIRLVKQFGVRKWAQIAERVA-GRAGKQCRERWHNHL 187
                      799*****************************.*************97 PP
2Myb_DNA-binding56.56.4e-18193235145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eE+ +lv+a+++ G++ W+ Ia+ ++ gRt++ +k++w+
      CCG030752.1 193 KDSWSEEEERILVEAHTKVGNR-WAEIAKLIP-GRTENAIKNHWN 235
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.07136191IPR017930Myb domain
SuperFamilySSF466895.75E-30139234IPR009057Homeodomain-like
SMARTSM007177.9E-17140189IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-27142195IPR009057Homeodomain-like
PfamPF139212.6E-18144202No hitNo description
CDDcd001675.12E-16144187No hitNo description
PROSITE profilePS5129421.149192242IPR017930Myb domain
SMARTSM007179.1E-17192240IPR001005SANT/Myb domain
CDDcd001671.76E-13195238No hitNo description
Gene3DG3DSA:1.10.10.609.0E-21196240IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MEGGGGGGGG GGRFGHQNLQ NNRSIYQPTP PLTATDSFLF CQSHHTPQNI QNDDKSKETL  60
VSTNGLCGFP PPSGAIGAVP WQSFSETSFV DGLFVDGDSL NRAYDGNPNG GLSGEVNNVS  120
GKSCKGMGKK TKKGSCATLI KGQWTEEEDR NLIRLVKQFG VRKWAQIAER VAGRAGKQCR  180
ERWHNHLRPD IKKDSWSEEE ERILVEAHTK VGNRWAEIAK LIPGRTENAI KNHWNATKRR  240
QNSRRKHKQK ESQSGKPQPS ILEDYIRSKN LKNASTSVTS TQSTTTNTPS SSISEEPSSQ  300
FNYFLPELSE SASDDSPSLL AQSCNDDELL FIQNFFGNKS KEPSSTDKVA TENPTMEVDN  360
FNPDSFNDSL DSCGLYQNNG CQQLKDLCDN DFDISTLNPK LCTNGFQAVT DQQTPTYNHL  420
HSDLYLSYLL NGASNSPGSS FVEYGYNSTN TDMDMDIDQT RPQNGKEMDL IEMISSSQLS  480
KGIDNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-481392412104C-Myb DNA-Binding Domain
1msf_C5e-481392412104C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032290.10.0PREDICTED: transcription factor MYB98
TrEMBLB9HP580.0B9HP58_POPTR; Uncharacterized protein
STRINGPOPTR_0009s04870.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.16e-69myb domain protein 119