PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG030641.3

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB_related

Protein Properties

Length: 1118aa MW: 122144 Da PI: 4.7061

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG030641.3	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.7	1.8e-10	968	1010	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++++ el++++++q+G++ + I + ++ gRt+ q+k+++ k CCG030641.3 968 SRWSKQDTELFYEGIQQFGTD-LSMIQQLFP-GRTRHQVKLKYKK 1010 59*****************.*****.*********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	2.3E-27	960	1042	No hit	No description
PROSITE profile	PS51293	10.655	965	1013	IPR017884	SANT domain
SMART	SM00717	1.7E-7	966	1014	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.32E-10	968	1016	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.0E-6	969	1010	IPR009057	Homeodomain-like
CDD	cd00167	1.91E-6	969	1010	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1118 aa Download sequence Send to blast
MTRWASGALD PEISTSGDVV TSVKRDVWAM IADLQFFLVI ACYRPPRSRL GGKFQPKAKP 60 RPKKVEFVPI PSIPPSEAKE KAVAASQTSL DTKISVQPFG IMDEKLTCQI SLLSPSSPTG 120 TKEHLKSNDG KTKLVEESGS PLATSDMVGV KEPQKYKEGL SSCEIGSLEA AKLSPARRND 180 AGSVGAMDSE AAISGCNDDQ ESSVVKSAGV AGSLGFDSDL LDDILPKSLK NNSRAGGKFK 240 PKAKPRQRNE NPAPVSSSPS KCAKDEPKAH SQKTQSTEPI DVANTRMNPD GPTLLQQGNV 300 ESNEPSKDSE VLYFSDNNCL ELVNPSSENI ATEEDVCPPN TQLAEMKSGN DVGLNSRFVE 360 SAIEVGSMRL DLDAFDYMDP QPAISTGRSA GKLQLKVKAW PRKGTSELAA SAVPNTAVEK 420 LAGLASTVLD NMLPVESCGV EHVRLTDHVG EPNMESAGTK EPGGNNGKAL LSPPEILATV 480 SCEKDSKGKS SFPTQKYVDF SAFMKCNVVA TDFSSPNEAA VQVDSGRLEL EESGALPGLE 540 TPGFLSPGVM ESVMAPPPNV QHVPSGTINI DGCPVASFPS DNIVDSPCTH LGDFIPQDPC 600 TSEIQMNQEL KNLTETSHSD NVTAVHREDA SDLPEKETSS SRKRKAAPVS CSSWKSQKAS 660 VAGDMNEHDK SSRCPRKQSA TPQLGDEPEY EAHGNGGLPL DNNDDSSMHP GDFIPIDPCT 720 YEFPVNRNQK DFTESNCLAN ANVGCSEDVP VVPEKECSKS GKRKVFSASN CSWKSKKTSV 780 AAGPQVVDDL DEAHDNGGLP EPPGSSVDEE DNDYEPRGDE ESDDENRVEI APRKKRASKK 840 SKEPVNKNEK SVRKRNKSID TPEQSTQKPR KKFSHSTRRN KRCVNKDLLN MPEDEIDFKR 900 LPIRDIILFA EYKERTDNPF HGEYSHNEED GFASEQDVTH GDDQTYVRAQ PSSSLFNYQS 960 FMDRAPNSRW SKQDTELFYE GIQQFGTDLS MIQQLFPGRT RHQVKLKYKK EERQHPLRLH 1020 EALSSRPKDN SYFEKLIEQL QEVAGTQEEQ ESYKDDLVDV SGEEDAELNA ETSGEVTKPE 1080 QGEKVGVEEQ EENVAEDHHG PLKSCVSDED VVDIWGSY

Sequence ? help Back to Top

Protein Sequence Length: 1118 aa Download sequence Send to blast

MTRWASGALD PEISTSGDVV TSVKRDVWAM IADLQFFLVI ACYRPPRSRL GGKFQPKAKP  60
RPKKVEFVPI PSIPPSEAKE KAVAASQTSL DTKISVQPFG IMDEKLTCQI SLLSPSSPTG  120
TKEHLKSNDG KTKLVEESGS PLATSDMVGV KEPQKYKEGL SSCEIGSLEA AKLSPARRND  180
AGSVGAMDSE AAISGCNDDQ ESSVVKSAGV AGSLGFDSDL LDDILPKSLK NNSRAGGKFK  240
PKAKPRQRNE NPAPVSSSPS KCAKDEPKAH SQKTQSTEPI DVANTRMNPD GPTLLQQGNV  300
ESNEPSKDSE VLYFSDNNCL ELVNPSSENI ATEEDVCPPN TQLAEMKSGN DVGLNSRFVE  360
SAIEVGSMRL DLDAFDYMDP QPAISTGRSA GKLQLKVKAW PRKGTSELAA SAVPNTAVEK  420
LAGLASTVLD NMLPVESCGV EHVRLTDHVG EPNMESAGTK EPGGNNGKAL LSPPEILATV  480
SCEKDSKGKS SFPTQKYVDF SAFMKCNVVA TDFSSPNEAA VQVDSGRLEL EESGALPGLE  540
TPGFLSPGVM ESVMAPPPNV QHVPSGTINI DGCPVASFPS DNIVDSPCTH LGDFIPQDPC  600
TSEIQMNQEL KNLTETSHSD NVTAVHREDA SDLPEKETSS SRKRKAAPVS CSSWKSQKAS  660
VAGDMNEHDK SSRCPRKQSA TPQLGDEPEY EAHGNGGLPL DNNDDSSMHP GDFIPIDPCT  720
YEFPVNRNQK DFTESNCLAN ANVGCSEDVP VVPEKECSKS GKRKVFSASN CSWKSKKTSV  780
AAGPQVVDDL DEAHDNGGLP EPPGSSVDEE DNDYEPRGDE ESDDENRVEI APRKKRASKK  840
SKEPVNKNEK SVRKRNKSID TPEQSTQKPR KKFSHSTRRN KRCVNKDLLN MPEDEIDFKR  900
LPIRDIILFA EYKERTDNPF HGEYSHNEED GFASEQDVTH GDDQTYVRAQ PSSSLFNYQS  960
FMDRAPNSRW SKQDTELFYE GIQQFGTDLS MIQQLFPGRT RHQVKLKYKK EERQHPLRLH  1020
EALSSRPKDN SYFEKLIEQL QEVAGTQEEQ ESYKDDLVDV SGEEDAELNA ETSGEVTKPE  1080
QGEKVGVEEQ EENVAEDHHG PLKSCVSDED VVDIWGSY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	834	842	KRASKKSKE

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214213	0.0	AC214213.1 Populus trichocarpa clone POP024-E15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011010994.1	0.0	PREDICTED: uncharacterized protein LOC105115711 isoform X2
TrEMBL	A0A3N7FPD9	0.0	A0A3N7FPD9_POPTR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3666	29	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	1e-44	MYB_related family protein