PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG030641.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 1118aa MW: 122144 Da PI: 4.7061 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.7 | 1.8e-10 | 968 | 1010 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++++ el++++++q+G++ + I + ++ gRt+ q+k+++ k CCG030641.3 968 SRWSKQDTELFYEGIQQFGTD-LSMIQQLFP-GRTRHQVKLKYKK 1010 59*******************.*********.***********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 2.3E-27 | 960 | 1042 | No hit | No description |
PROSITE profile | PS51293 | 10.655 | 965 | 1013 | IPR017884 | SANT domain |
SMART | SM00717 | 1.7E-7 | 966 | 1014 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.32E-10 | 968 | 1016 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.0E-6 | 969 | 1010 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.91E-6 | 969 | 1010 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1118 aa Download sequence Send to blast |
MTRWASGALD PEISTSGDVV TSVKRDVWAM IADLQFFLVI ACYRPPRSRL GGKFQPKAKP 60 RPKKVEFVPI PSIPPSEAKE KAVAASQTSL DTKISVQPFG IMDEKLTCQI SLLSPSSPTG 120 TKEHLKSNDG KTKLVEESGS PLATSDMVGV KEPQKYKEGL SSCEIGSLEA AKLSPARRND 180 AGSVGAMDSE AAISGCNDDQ ESSVVKSAGV AGSLGFDSDL LDDILPKSLK NNSRAGGKFK 240 PKAKPRQRNE NPAPVSSSPS KCAKDEPKAH SQKTQSTEPI DVANTRMNPD GPTLLQQGNV 300 ESNEPSKDSE VLYFSDNNCL ELVNPSSENI ATEEDVCPPN TQLAEMKSGN DVGLNSRFVE 360 SAIEVGSMRL DLDAFDYMDP QPAISTGRSA GKLQLKVKAW PRKGTSELAA SAVPNTAVEK 420 LAGLASTVLD NMLPVESCGV EHVRLTDHVG EPNMESAGTK EPGGNNGKAL LSPPEILATV 480 SCEKDSKGKS SFPTQKYVDF SAFMKCNVVA TDFSSPNEAA VQVDSGRLEL EESGALPGLE 540 TPGFLSPGVM ESVMAPPPNV QHVPSGTINI DGCPVASFPS DNIVDSPCTH LGDFIPQDPC 600 TSEIQMNQEL KNLTETSHSD NVTAVHREDA SDLPEKETSS SRKRKAAPVS CSSWKSQKAS 660 VAGDMNEHDK SSRCPRKQSA TPQLGDEPEY EAHGNGGLPL DNNDDSSMHP GDFIPIDPCT 720 YEFPVNRNQK DFTESNCLAN ANVGCSEDVP VVPEKECSKS GKRKVFSASN CSWKSKKTSV 780 AAGPQVVDDL DEAHDNGGLP EPPGSSVDEE DNDYEPRGDE ESDDENRVEI APRKKRASKK 840 SKEPVNKNEK SVRKRNKSID TPEQSTQKPR KKFSHSTRRN KRCVNKDLLN MPEDEIDFKR 900 LPIRDIILFA EYKERTDNPF HGEYSHNEED GFASEQDVTH GDDQTYVRAQ PSSSLFNYQS 960 FMDRAPNSRW SKQDTELFYE GIQQFGTDLS MIQQLFPGRT RHQVKLKYKK EERQHPLRLH 1020 EALSSRPKDN SYFEKLIEQL QEVAGTQEEQ ESYKDDLVDV SGEEDAELNA ETSGEVTKPE 1080 QGEKVGVEEQ EENVAEDHHG PLKSCVSDED VVDIWGSY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 834 | 842 | KRASKKSKE |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214213 | 0.0 | AC214213.1 Populus trichocarpa clone POP024-E15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011010994.1 | 0.0 | PREDICTED: uncharacterized protein LOC105115711 isoform X2 | ||||
TrEMBL | A0A3N7FPD9 | 0.0 | A0A3N7FPD9_POPTR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3666 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 1e-44 | MYB_related family protein |