PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030641.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 1118aa    MW: 122144 Da    PI: 4.7061
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030641.3genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.71.8e-109681010246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding    2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46  
                        rW++++ el++++++q+G++  + I + ++ gRt+ q+k+++ k
      CCG030641.3  968 SRWSKQDTELFYEGIQQFGTD-LSMIQQLFP-GRTRHQVKLKYKK 1010
                       59*******************.*********.***********87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159632.3E-279601042No hitNo description
PROSITE profilePS5129310.6559651013IPR017884SANT domain
SMARTSM007171.7E-79661014IPR001005SANT/Myb domain
SuperFamilySSF466892.32E-109681016IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-69691010IPR009057Homeodomain-like
CDDcd001671.91E-69691010No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1118 aa     Download sequence    Send to blast
MTRWASGALD PEISTSGDVV TSVKRDVWAM IADLQFFLVI ACYRPPRSRL GGKFQPKAKP  60
RPKKVEFVPI PSIPPSEAKE KAVAASQTSL DTKISVQPFG IMDEKLTCQI SLLSPSSPTG  120
TKEHLKSNDG KTKLVEESGS PLATSDMVGV KEPQKYKEGL SSCEIGSLEA AKLSPARRND  180
AGSVGAMDSE AAISGCNDDQ ESSVVKSAGV AGSLGFDSDL LDDILPKSLK NNSRAGGKFK  240
PKAKPRQRNE NPAPVSSSPS KCAKDEPKAH SQKTQSTEPI DVANTRMNPD GPTLLQQGNV  300
ESNEPSKDSE VLYFSDNNCL ELVNPSSENI ATEEDVCPPN TQLAEMKSGN DVGLNSRFVE  360
SAIEVGSMRL DLDAFDYMDP QPAISTGRSA GKLQLKVKAW PRKGTSELAA SAVPNTAVEK  420
LAGLASTVLD NMLPVESCGV EHVRLTDHVG EPNMESAGTK EPGGNNGKAL LSPPEILATV  480
SCEKDSKGKS SFPTQKYVDF SAFMKCNVVA TDFSSPNEAA VQVDSGRLEL EESGALPGLE  540
TPGFLSPGVM ESVMAPPPNV QHVPSGTINI DGCPVASFPS DNIVDSPCTH LGDFIPQDPC  600
TSEIQMNQEL KNLTETSHSD NVTAVHREDA SDLPEKETSS SRKRKAAPVS CSSWKSQKAS  660
VAGDMNEHDK SSRCPRKQSA TPQLGDEPEY EAHGNGGLPL DNNDDSSMHP GDFIPIDPCT  720
YEFPVNRNQK DFTESNCLAN ANVGCSEDVP VVPEKECSKS GKRKVFSASN CSWKSKKTSV  780
AAGPQVVDDL DEAHDNGGLP EPPGSSVDEE DNDYEPRGDE ESDDENRVEI APRKKRASKK  840
SKEPVNKNEK SVRKRNKSID TPEQSTQKPR KKFSHSTRRN KRCVNKDLLN MPEDEIDFKR  900
LPIRDIILFA EYKERTDNPF HGEYSHNEED GFASEQDVTH GDDQTYVRAQ PSSSLFNYQS  960
FMDRAPNSRW SKQDTELFYE GIQQFGTDLS MIQQLFPGRT RHQVKLKYKK EERQHPLRLH  1020
EALSSRPKDN SYFEKLIEQL QEVAGTQEEQ ESYKDDLVDV SGEEDAELNA ETSGEVTKPE  1080
QGEKVGVEEQ EENVAEDHHG PLKSCVSDED VVDIWGSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1834842KRASKKSKE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2142130.0AC214213.1 Populus trichocarpa clone POP024-E15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010994.10.0PREDICTED: uncharacterized protein LOC105115711 isoform X2
TrEMBLA0A3N7FPD90.0A0A3N7FPD9_POPTR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36662938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-44MYB_related family protein