PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG030166.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | AP2 | ||||||||
Protein Properties | Length: 343aa MW: 38813.1 Da PI: 8.6789 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.3 | 2.4e-10 | 43 | 99 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr +++++d ++n ++k+ + g ++ +e Aa a++ a++k++g CCG030166.1 43 SIYRGVTRHRWTGRHEVHLWDkNCWNEsQNKKGRQGAYDDEEVAAHAYDLAALKYWG 99 57*******************99998898888888********************98 PP | |||||||
2 | AP2 | 31.3 | 4.9e-10 | 139 | 181 | 1 | 46 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaa 46 s+y+GV++++ +g W+A+I + g +k+ +lg+ eeAa+a+ CCG030166.1 139 SKYRGVSRHHHNGGWEARIGRvF---G-NKYLYLGTLAPQEEAAAAY 181 89****************99966...3.6****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.23E-14 | 43 | 109 | No hit | No description |
Pfam | PF00847 | 8.3E-7 | 43 | 99 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-13 | 43 | 109 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.095 | 44 | 107 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-11 | 44 | 108 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-16 | 44 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-6 | 45 | 56 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-6 | 89 | 109 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.68E-12 | 139 | 181 | No hit | No description |
SuperFamily | SSF54171 | 2.09E-7 | 139 | 184 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.2E-6 | 139 | 181 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 10.441 | 140 | 181 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-6 | 140 | 182 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-5 | 140 | 198 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MAKLSQQNTK NTAINRNNAT NGVTKVKRKR RSVPRDSPPQ RSSIYRGVTR HRWTGRHEVH 60 LWDKNCWNES QNKKGRQGAY DDEEVAAHAY DLAALKYWGP ETILNFPLST YQNQLKEMEG 120 KSREEYIGSL RRKSNRGVSK YRGVSRHHHN GGWEARIGRV FGNKYLYLGT LAPQEEAAAA 180 YGIEHRGGLN ADLSRYIKWL KPNQNNSNGS NDLNLPNPMI IGTDNSTHPN PTQELGPTFP 240 HNEQTYQPSE TTLIPLRPAA ANPTSALGLL LQSSKFKEMM EMTAVTDCPP TSSSELELTP 300 SSFPEDVQTY FDCQYSSSYG DQGDDMIFGD YNSFMLPMFH SDF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011018218.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 8e-94 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A2K2A424 | 0.0 | A0A2K2A424_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s19360.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1300 | 34 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 3e-91 | ARIA-interacting double AP2 domain protein |
Publications ? help Back to Top | |||
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