PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG030077.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 676aa MW: 76596.4 Da PI: 6.1883

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG030077.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.6	3.4e-55	5	132	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeelv +yLk+k++g+k+el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v s + CCG030077.1 5 LPPGFRFHPTDEELVAYYLKRKINGHKIEL-EIIPEVDLYKSEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVNS-Q 100 79**************************.99***********6434555777**********************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +++g+kktLv+y+grap+g +t Wvmheyrl CCG030077.1 101 MRAIGMKKTLVYYRGRAPHGARTGWVMHEYRL 132 999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-62	3	155	IPR003441	NAC domain
PROSITE profile	PS51005	60.953	5	155	IPR003441	NAC domain
Pfam	PF02365	4.7E-30	6	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence Send to blast
MAPVLPPGFR FHPTDEELVA YYLKRKINGH KIELEIIPEV DLYKSEPWDL PGKSLLPSKD 60 LEWYFFSPRD RKYPNGSRTN RATKAGYWKA TGKDRKVNSQ MRAIGMKKTL VYYRGRAPHG 120 ARTGWVMHEY RLDERECETN SGLQDAYALC RVSKKTTTIP KIGEHYVSTT YRMPCEHSSS 180 IELYSDHGRS EEFESSNYPM HKNVDTCSTS YRANIGSPLD ISESRNGKWA PSMDGFGMSP 240 SQFPSHSTIP YPPPKVNMAL ECARLQHRFI LPPLEVEDFP QVGLADIKVM QQPSMPESTS 300 THQTDILQEI RSVAHASQEL INQSSFQNTW GGNYAATDHD FTFMDGKNVQ HNMLSDMMMN 360 STRWAEKYWI DPSTSSRSIE ISDLDETFKT ESMVENLRWV GMSNSDLEKS FMEETKIVPI 420 ENISSFRSRE EHEVQGENGH ADDRMGFNDS EDFSLGFIND EPNDDTFIDE SNVDDLTSSP 480 SFEVVEDIKV NHGLFVSTRQ ATETFFHQLV PSQTVKIYLN PAAVTSNFSI EKADSTKSYG 540 KETTISTAKE NFVGSKSSVQ YPWRNLARNV VCLIVIILMH CFYLGENVEN GRLMDGFMGS 600 GRVGEEGCCP SKNIKPMMKP VGKLIKWDDN KKEKDLVVTI RGGGGSKFGV YMKKLGLFLT 660 ISFALCTILV NHSMTP

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence Send to blast

MAPVLPPGFR FHPTDEELVA YYLKRKINGH KIELEIIPEV DLYKSEPWDL PGKSLLPSKD  60
LEWYFFSPRD RKYPNGSRTN RATKAGYWKA TGKDRKVNSQ MRAIGMKKTL VYYRGRAPHG  120
ARTGWVMHEY RLDERECETN SGLQDAYALC RVSKKTTTIP KIGEHYVSTT YRMPCEHSSS  180
IELYSDHGRS EEFESSNYPM HKNVDTCSTS YRANIGSPLD ISESRNGKWA PSMDGFGMSP  240
SQFPSHSTIP YPPPKVNMAL ECARLQHRFI LPPLEVEDFP QVGLADIKVM QQPSMPESTS  300
THQTDILQEI RSVAHASQEL INQSSFQNTW GGNYAATDHD FTFMDGKNVQ HNMLSDMMMN  360
STRWAEKYWI DPSTSSRSIE ISDLDETFKT ESMVENLRWV GMSNSDLEKS FMEETKIVPI  420
ENISSFRSRE EHEVQGENGH ADDRMGFNDS EDFSLGFIND EPNDDTFIDE SNVDDLTSSP  480
SFEVVEDIKV NHGLFVSTRQ ATETFFHQLV PSQTVKIYLN PAAVTSNFSI EKADSTKSYG  540
KETTISTAKE NFVGSKSSVQ YPWRNLARNV VCLIVIILMH CFYLGENVEN GRLMDGFMGS  600
GRVGEEGCCP SKNIKPMMKP VGKLIKWDDN KKEKDLVVTI RGGGGSKFGV YMKKLGLFLT  660
ISFALCTILV NHSMTP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-54	5	161	20	174	NAC domain-containing protein 19
3swm_B	2e-54	5	161	20	174	NAC domain-containing protein 19
3swm_C	2e-54	5	161	20	174	NAC domain-containing protein 19
3swm_D	2e-54	5	161	20	174	NAC domain-containing protein 19
3swp_A	2e-54	5	161	20	174	NAC domain-containing protein 19
3swp_B	2e-54	5	161	20	174	NAC domain-containing protein 19
3swp_C	2e-54	5	161	20	174	NAC domain-containing protein 19
3swp_D	2e-54	5	161	20	174	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011038331.1	0.0	PREDICTED: NAC domain-containing protein 86
Refseq	XP_011038332.1	0.0	PREDICTED: NAC domain-containing protein 86
TrEMBL	A0A2K1X7R2	0.0	A0A2K1X7R2_POPTR; Uncharacterized protein
STRING	POPTR_0017s02020.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4421	34	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-155	NAC domain containing protein 28