PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG029598.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 344aa    MW: 36970.9 Da    PI: 10.2292
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG029598.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.5e-1287132247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+  ++ +   lG+g+W+ I++++  +Rt+ q+ s+ qky
      CCG029598.1  87 KPWTEEEHRTFLSGLSNLGKGDWRGISKKFVITRTPSQVASHAQKY 132
                      58*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501589.01724IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.15781137IPR017930Myb domain
SuperFamilySSF466898.97E-1682137IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-1684136IPR006447Myb domain, plants
SMARTSM007175.8E-1085135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-1185131IPR009057Homeodomain-like
PfamPF002492.1E-1187132IPR001005SANT/Myb domain
CDDcd001672.74E-888133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MVKEAARKCS HCGQNGHNSR TCTKDCIKLF GVSIEKREQT IKGSASLDNI ASLDDINGAH  60
HVDHGYSSDG VIGFKRGRTA YTRKKGKPWT EEEHRTFLSG LSNLGKGDWR GISKKFVITR  120
TPSQVASHAQ KYFLRQQASN EKKKRRSSLF DMTFKGTDLA SHQDAQKLPL IKTCGSTSQA  180
STSSASPLGN ASEDIPSQAI SSLHLINQFP LLCLHNPQVM SPTVAAGPGV SNYNPCMQRV  240
LANGRRSFPA SKAAPFVSMM NYPRAYHPYM LNSPASLAGC APCIAHQPSG ITSPSSFPRS  300
FSPQGASTSL AKMEDPLELK IGQPPKSPQG ANLSSPASGA ISVI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141145KKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026742.10.0PREDICTED: transcription factor MYB1R1-like
TrEMBLB9GK380.0B9GK38_POPTR; Uncharacterized protein
STRINGPOPTR_0001s11730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF138741921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.17e-54MYB_related family protein