PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028867.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 554aa    MW: 60241.9 Da    PI: 7.5011
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028867.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.92.4e-052632951955
                  HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +f+ Lr l+P+     ++K +Ka+ L +++e+++ Lq
  CCG028867.1 263 RFQMLRALIPHG----DQKRDKASFLLEVIEHVQFLQ 295
                  699********7....7******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.12E-5263299No hitNo description
SuperFamilySSF474591.02E-8263315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-11263318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MELPQQRPFG TEGRKPTHDF LSLYSHSSTV HQDPRPPSQG GFLQTHDFLQ PLEQVSKATA  60
REDANVEILT IDKPPPPAPP PSVEHILPGG IGTYSISHVS YFNQRVPKPE NTIFSVAQAS  120
STDKNDENSN CSSYSASGFT LWEESTLKKG KTGKENVGER SNIIREAAAK TGQWTTSERP  180
SQSSSNNHRN SFSSLSSSQP PGLKCTQSFI EMIRSAKGGN LDDDLDDEET FLLKKETPSP  240
IHKEELRIKV DGKSNDQKPN TPRFQMLRAL IPHGDQKRDK ASFLLEVIEH VQFLQEKVQK  300
YEGSYQGWNH EHAKLGPWRS NSRPVESSVD QSRGVNSGVG PALLFAANLD EKNINISPST  360
NPGGARNAVE SNMSSASTFN AMEHHPNLGI TNKTMPFPIS LQPNLFHPGR IAGAAAQFPP  420
RLAFDAENTA TQPQPQPQPQ PQPCHAISCT SDGAVASDKL KQQNLTVEGG TISISSALLN  480
TLTQALQSSG VDLSQASISV QIELGKKGNS RQTAPTSIVK DNNVPPSNQG TIRSRVSSGE  540
ESDQVLKKLK TSKG
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010364.10.0PREDICTED: transcription factor BIM1 isoform X1
SwissprotQ9LEZ31e-109BIM1_ARATH; Transcription factor BIM1
TrEMBLA0A2K1XI220.0A0A2K1XI22_POPTR; Uncharacterized protein
STRINGPOPTR_0015s03550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-104bHLH family protein
Publications ? help Back to Top
  1. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]