PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG028867.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 554aa MW: 60241.9 Da PI: 7.5011 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.9 | 2.4e-05 | 263 | 295 | 19 | 55 |
HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +f+ Lr l+P+ ++K +Ka+ L +++e+++ Lq CCG028867.1 263 RFQMLRALIPHG----DQKRDKASFLLEVIEHVQFLQ 295 699********7....7******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.12E-5 | 263 | 299 | No hit | No description |
SuperFamily | SSF47459 | 1.02E-8 | 263 | 315 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-11 | 263 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 554 aa Download sequence Send to blast |
MELPQQRPFG TEGRKPTHDF LSLYSHSSTV HQDPRPPSQG GFLQTHDFLQ PLEQVSKATA 60 REDANVEILT IDKPPPPAPP PSVEHILPGG IGTYSISHVS YFNQRVPKPE NTIFSVAQAS 120 STDKNDENSN CSSYSASGFT LWEESTLKKG KTGKENVGER SNIIREAAAK TGQWTTSERP 180 SQSSSNNHRN SFSSLSSSQP PGLKCTQSFI EMIRSAKGGN LDDDLDDEET FLLKKETPSP 240 IHKEELRIKV DGKSNDQKPN TPRFQMLRAL IPHGDQKRDK ASFLLEVIEH VQFLQEKVQK 300 YEGSYQGWNH EHAKLGPWRS NSRPVESSVD QSRGVNSGVG PALLFAANLD EKNINISPST 360 NPGGARNAVE SNMSSASTFN AMEHHPNLGI TNKTMPFPIS LQPNLFHPGR IAGAAAQFPP 420 RLAFDAENTA TQPQPQPQPQ PQPCHAISCT SDGAVASDKL KQQNLTVEGG TISISSALLN 480 TLTQALQSSG VDLSQASISV QIELGKKGNS RQTAPTSIVK DNNVPPSNQG TIRSRVSSGE 540 ESDQVLKKLK TSKG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011010364.1 | 0.0 | PREDICTED: transcription factor BIM1 isoform X1 | ||||
Swissprot | Q9LEZ3 | 1e-109 | BIM1_ARATH; Transcription factor BIM1 | ||||
TrEMBL | A0A2K1XI22 | 0.0 | A0A2K1XI22_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s03550.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7252 | 31 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.4 | 1e-104 | bHLH family protein |
Publications ? help Back to Top | |||
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