PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG028251.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | LBD | ||||||||
Protein Properties | Length: 231aa MW: 25236.3 Da PI: 6.1228 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 91.1 | 1.4e-28 | 4 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C++lr++C +dC + p++ p++q++++ +++k++G++ +++l++a +++ r+++++sl+yeA+ r+ +Pv+G+vg+++++++q +q+++e CCG028251.1 4 SCNGCRILRKGCGDDCSIKPCLqwietPDSQANATLFLAKFYGRAGLMNLINAGSQHLRPATFKSLLYEACGRIVNPVSGSVGLLSTGSWQQCQAAVE 101 6************************************************************************************************* PP DUF260 94 lallkee 100 ++l +e+ CCG028251.1 102 AVLKGEP 108 9988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.426 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-23 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MRMSCNGCRI LRKGCGDDCS IKPCLQWIET PDSQANATLF LAKFYGRAGL MNLINAGSQH 60 LRPATFKSLL YEACGRIVNP VSGSVGLLST GSWQQCQAAV EAVLKGEPIT QTASTDQLTV 120 GASDTRHVSR EVDWCASDQP RKVKSKRQFN RSTSKRKSSR TESEHTCFEF MIGFDGSRSV 180 SPDSVLSWRP SLGSDNEETD SMGSVETVEA SKLDEPAEGT DLDLDLTLGH Y |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011005502.1 | 1e-172 | PREDICTED: LOB domain-containing protein 40-like | ||||
Swissprot | Q9M886 | 8e-66 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A2K1Y9E0 | 1e-158 | A0A2K1Y9E0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s05340.1 | 1e-160 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 5e-60 | LOB domain-containing protein 41 |