PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG027703.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | LBD | ||||||||
Protein Properties | Length: 208aa MW: 22627.7 Da PI: 8.5996 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 95 | 8.1e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C++ Cvl+ ++ p++q +++ +++k+FG+s +++l++a+pe +r+++++sl++eA+ r+ +Pv+G+vg++++++++++q+++e CCG027703.1 2 SCNGCRVLRKGCSETCVLRSCLhwitnPEAQGNATLFLAKFFGRSDLMSLISAVPEVQRPALFQSLLFEACGRTVNPVNGVVGLLWSGNWHVCQEAVE 99 6***********************************************************************************************99 PP DUF260 94 lall 97 ++l CCG027703.1 100 TVLS 103 8875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.899 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.6E-25 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MSCNGCRVLR KGCSETCVLR SCLHWITNPE AQGNATLFLA KFFGRSDLMS LISAVPEVQR 60 PALFQSLLFE ACGRTVNPVN GVVGLLWSGN WHVCQEAVET VLSGGALRPL PGTLTGVLAP 120 NCDESSDRFS AAADAVHNMA RNQSRSFAKE KNNEVVSDHH VNLRLARGKG GRDKRGRDAV 180 SFYTRGESET ISFESSGGDK KRLLNLFV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011017127.1 | 1e-152 | PREDICTED: LOB domain-containing protein 39-like | ||||
Swissprot | Q9SZE8 | 6e-65 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A1L6K5D3 | 1e-144 | A0A1L6K5D3_POPTO; LOB domain-containing protein 39-like | ||||
STRING | POPTR_0002s12020.1 | 1e-143 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 7e-67 | LOB domain-containing protein 39 |