PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG027244.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 1167aa MW: 125248 Da PI: 4.2509 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.6e-05 | 62 | 84 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg +F++++ rH r H CCG027244.1 62 YVCHKCGWPFPNPHPSARHRRAH 84 9*******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.829 | 62 | 84 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 64 | 84 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1167 aa Download sequence Send to blast |
MTEGRMAGAC AVNHVVTVSH CVPYCMSTQT YTLSFSSSWK MDNQDPRKNP THTPGHESHG 60 VYVCHKCGWP FPNPHPSARH RRAHKKICGT LEGYKFVDSE ETPLSALSDD DRGSDEDPKT 120 PSPKGLERGI NERGTGGVGS RSNRSEDDVF TDAIAEFPES GSSPVTGEHI RDVKEPGINL 180 EINKATAQSS EDGSITVISP PPSNSADHIQ MQSTEVPVTN LPGSAQESSL DHGSNATIAS 240 TTRSLTDCRG EESDFEHSHD NGSSAWDSIP IKPETQTDAS QENKKSGTVE DLPDTDAKGN 300 EETKLDKQLL DVVVSTDDNA EDASEVASES QKMEDVTSQP VPAAEVLQLK EGGYTDDLAS 360 GMSLNDLSPE VNLVEPAHSS ISTAQIEGDT QEIDSAVYVN SAVSYDNKGE GNGNMHVLIL 420 PNDITVVADA ENMVKGFKDL EGWKLPQPVN MDSFEVSNNV KDSDLENNPQ GFNSKPLTED 480 TKVSASNMHV LNDNLEPKDG TSQHIVEELP DEAEADVAQR SEVSVTDVVT GDLEKSISVH 540 STVEDVPRDH CETSSLTSSV EHATKVISDT NTVVVPMDAE VRRTNLIGMD DTGNDEKDKI 600 ESSEVGENDK NKRNAKESFA ENRIPTSKHA SISSEQADQR NSELGDVKAA GLEEGKIERC 660 NVSEIVTEGD SVSGLGEENL LREPKTTPES AVNVESCFTL ENDINVCEGK LPQLASIPSE 720 QADQRNNVLG DVKSAGLEEG KIERCNVSEI VTEGDSVSGL GEENLLRGPK TTPESAVNVE 780 SCFISENDIN VCEGKLPQHE HTDIGGDLDP QESRKEPESN GMANQQVERA GEVSAAAESD 840 SGGDAEVLWK SSEDKMAREP LVSPSEPSSS LQNSSPVADN LAIDVLGVAS GNTTESLPHE 900 GDNNLVAQQV VASATDFSVD SISQTDSLEG HWGSVSVLST ISDIPAILDA EPLPSNGSQA 960 LSEAEKATLK KPIAASETEH ADKSDIFDPP SFMTLVEPRD VVNQKGASFE SQTTQDPQQP 1020 KAASVQAGWF PSITNVLNES QGRKKNEEII AKVTNWSTGD QCPSLRSPQH APLKSLLGEA 1080 SMETKSKKLN AKEIPVEKDG PAAKDNGALP KTVSSILAPQ EPVGEPAKEE ENAWSSPARY 1140 PADIKREKRK VKGRPYWAQF VCCSSVN |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214097 | 1e-124 | AC214097.1 Populus trichocarpa clone POP027-H14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011006103.1 | 0.0 | PREDICTED: uncharacterized protein LOC105112197 isoform X1 | ||||
TrEMBL | A0A2I4KKX1 | 0.0 | A0A2I4KKX1_POPTR; C2H2 family protein | ||||
STRING | POPTR_0014s14320.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5051 | 17 | 19 |