PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG027164.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | FAR1 | ||||||||
Protein Properties | Length: 257aa MW: 29938.7 Da PI: 5.0577 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 77.2 | 3.2e-24 | 78 | 168 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY ++++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ ++++ + ++tr gC+a+l++ +++ +w+vtk+ eHnHel+ CCG027164.2 78 EFYIAHGRRTGFTVRIHHNRRSRINNMVIGQDFVCSKEGFREKKYVYRKDR-VlpPPPVTREGCQAMLRIALKDGITWVVTKFIAEHNHELM 168 69*****************************************99883333.234899********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-21 | 78 | 168 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MDSTSKQAFD LDETESCFVV ENYGENEFVD DELSENIELC LDEVDKIIEQ SSETSGSIND 60 AMEPCTGMEF KSRDDAREFY IAHGRRTGFT VRIHHNRRSR INNMVIGQDF VCSKEGFREK 120 KYVYRKDRVL PPPPVTREGC QAMLRIALKD GITWVVTKFI AEHNHELMSP SKVPWRGSAK 180 SLVSEDEKDR RIRELTIELN NEKQRCKRRC AAYQEQLRMV LSYVEEHTIH LSNKVQDIVN 240 NVKELENDME DSDCKYV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011024735.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 6-like | ||||
TrEMBL | B9GNH4 | 0.0 | B9GNH4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s24030.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8861 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-38 | FAR1 family protein |