PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025681.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 1023aa    MW: 112125 Da    PI: 4.8876
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025681.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65e-174086148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W +eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
      CCG025681.1 40 KGQWKAEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 86
                     799****************************9.************986 PP
2Myb_DNA-binding65.97.6e-2192138148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde+++++v+++G++ W+tIa++++ gR +kqc++rw+++l
      CCG025681.1  92 KGPWSKEEDEIIIELVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 138
                      79******************************.*************97 PP
3Myb_DNA-binding44.82.9e-14144186145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT++E+  l++a++ +G++ W+   + ++ gRt++ +k++w+
      CCG025681.1 144 KEAWTQQEEVALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 186
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.753586IPR017930Myb domain
SuperFamilySSF466898.61E-153792IPR009057Homeodomain-like
SMARTSM007178.8E-143988IPR001005SANT/Myb domain
PfamPF002492.6E-144086IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-224297IPR009057Homeodomain-like
CDDcd001677.26E-134386No hitNo description
PROSITE profilePS5129433.52187142IPR017930Myb domain
SuperFamilySSF466892.36E-3189185IPR009057Homeodomain-like
SMARTSM007176.5E-2091140IPR001005SANT/Myb domain
PfamPF002492.8E-1992138IPR001005SANT/Myb domain
CDDcd001671.88E-1794138No hitNo description
Gene3DG3DSA:1.10.10.607.5E-2998142IPR009057Homeodomain-like
PROSITE profilePS5129418.483143193IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-20143193IPR009057Homeodomain-like
SMARTSM007171.8E-14143191IPR001005SANT/Myb domain
PfamPF002492.1E-12144187IPR001005SANT/Myb domain
CDDcd001675.53E-11146186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1023 aa     Download sequence    Send to blast
MESSDRLISA PLDGLVSDRI PRPPKLLHGR TSGPARRSTK GQWKAEEDEI LRKAVQRFKG  60
KNWKKIAECF KDRTDVQCLH RWQKVLNPEL VKGPWSKEED EIIIELVNKY GPKKWSTIAQ  120
HLPGRIGKQC RERWHNHLNP AINKEAWTQQ EEVALIRAHQ IYGNRWAELT KFLPGRTDNA  180
IKNHWNSSVK KKLDSYVASG LLEQFQSSPL AGHQTLSLPA SSSRLHSSGD DNAQRGGSEA  240
EDISECSQES TMVGCSQSAG DQGIAVFHTR EEFQFAEESG PRKEQSSSPA SCSEQYYIPE  300
MPCELGGSSN FIQQSFSHNT LTSANSDYQF ELQELPNIST LELGQESSGL PTHCITANES  360
HELVNDPFQT SIGLGAPTSM GNIAASSAQS GQIFVSDDEC CRILFSEAAN CEIFSSGNIT  420
KDSNVADLGG DMDSSLPQSP NIQISETERS ASQSFCPPRS AILGTSCCQS FLPGSSLHCA  480
DDNKPVCGRE PNLLMVQSFG SLEQQFVTSI HDSFIYTIDA INSSCDNGTD NTELQEKPYL  540
KEPSKLVPVN TFPSVSDTIS SCAADEKPNV HAEQEAGGLC YEPPRFPSLD MPFLSCDLVQ  600
SGSDMQQEYS PLGIRQLMMS SMNCITPFRL WDSPSRDGSP DAVLKSAAKT FTGTPSILKK  660
RNRDLLSPLS ERRGDKKLEI DMASNLSKDF SCLDVMFDES ETHNRSSLLP PSSNQEKNHE  720
SSGEDKENLD PALEVADEFC GNTKDNVKQG TADSDARSKV HSDANSSGVL SEENTNDLLF  780
SPDQLGFKAD RAFGPSARTP RNLYRKILGT LSEHASGSES SFGNPCMIFS STSCKNHENH  840
IIESTSVQSI PSSAPSENIP DNSGNNAGTG NFGIFGDTPF KRSIESPSAW KSPWFINSFV  900
PGPRIDTDIS IEDIGYFMSP GDRSYDAIAL MKQLSEHTAS AYADALEVLG KDTPESILKE  960
RRRSNDQNGD QENRSHLASN VLTECRTLDF SECGTPGKLT ENGKSSSAIS FSSPSAYLLK  1020
GCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-70401936159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-70401936159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026592.10.0PREDICTED: myb-related protein 3R-1-like isoform X2
TrEMBLA0A3N7G9D40.0A0A3N7G9D4_POPTR; Uncharacterized protein
STRINGPOPTR_0018s00710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein