PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG025458.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 356aa MW: 39556.9 Da PI: 7.6848

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG025458.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.9	1.1e-33	23	77	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl CCG025458.1 23 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 77 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.347	20	80	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-32	20	78	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.61E-16	22	78	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-23	23	78	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-7	25	75	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-23	119	164	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MNSHDRPMCV QGDSGLVLTT DPKPRLRWTV ELHERFVDAV TQLGGPDKAT PKTIMRVMGV 60 KGLTLYHLKS HLQKFRLGKQ PHKDFNDHSI KDASALDLQR SAASSSGMMS RSMNDNSHMI 120 DAIRMQMEVQ RRLHEQLEVQ RHLQLRTEAQ GKYIQSLLEK ACQTLAGDQN LASGSYKGMG 180 NQGIPGMGAM KEFGTLNFPA FQDLNIYGGD QLDLQHNMDR PSLDGFMQNN DNICLGKKRP 240 SPYDGSGKSP LIWPDDLRLQ DLGSGPACLE PQDDPFKGDH IQMAPPSMDR GTDLDSISDM 300 YEIKPALQGD ALDEKKFEAS AKLKRPSPRR SPLAAERMSP MINTGAMPQG RNSPYG

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MNSHDRPMCV QGDSGLVLTT DPKPRLRWTV ELHERFVDAV TQLGGPDKAT PKTIMRVMGV  60
KGLTLYHLKS HLQKFRLGKQ PHKDFNDHSI KDASALDLQR SAASSSGMMS RSMNDNSHMI  120
DAIRMQMEVQ RRLHEQLEVQ RHLQLRTEAQ GKYIQSLLEK ACQTLAGDQN LASGSYKGMG  180
NQGIPGMGAM KEFGTLNFPA FQDLNIYGGD QLDLQHNMDR PSLDGFMQNN DNICLGKKRP  240
SPYDGSGKSP LIWPDDLRLQ DLGSGPACLE PQDDPFKGDH IQMAPPSMDR GTDLDSISDM  300
YEIKPALQGD ALDEKKFEAS AKLKRPSPRR SPLAAERMSP MINTGAMPQG RNSPYG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	8e-20	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-20	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-20	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-20	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC182660	0.0	AC182660.2 Populus trichocarpa clone Pop1-125N19, complete sequence.
GenBank	AC187861	0.0	AC187861.2 Populus trichocarpa clone Pop1-1A4, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011014197.1	0.0	PREDICTED: myb family transcription factor APL-like isoform X1
Swissprot	Q9SAK5	1e-120	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A3N7FMU4	0.0	A0A3N7FMU4_POPTR; Uncharacterized protein
STRING	POPTR_0010s18130.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4964	32	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	1e-112	G2-like family protein

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]